Gene detail information of Glyur001100s00028598 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38080.1 | 0 | Laccase/Diphenol oxidase family protein |
| NR | XP_004490574.1 | 0 | PREDICTED: laccase-4-like [Cicer arietinum] |
| COG | YP_005082287.1 | 5.00E-17 | Copper resistance protein A [Pseudovibrio sp. FO-BEG1] |
| Swissprot | tr|O80434|LAC4_ARATH | 0 | Laccase-4 (Precursor) |
| trEMBL | tr|I1JHB0|I1JHB0_SOYBN | 0 | Laccase {ECO:0000256|RuleBase:RU361119} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01100 | 5518 | 8217 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001100s00028598.1 | PF07732.10 | Cu-oxidase_3 | 52 | 108 | 2.60E-18 |
| Glyur001100s00028598.1 | PF00394.17 | Cu-oxidase | 122 | 270 | 4.50E-43 |
| Glyur001100s00028598.1 | PF07731.9 | Cu-oxidase_2 | 371 | 502 | 1.60E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.589 |
| SRR1783600 | control | 4.723 |
| SRR1783602 | moderate drought stress | 5.560 |
| SRR1811619 | moderate drought stress | 5.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.112 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.001 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.863 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.056 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.317 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.040 |
| SRR2868004 | Drought Stress (root) | 8.152 |
| SRR2967015 | Control (root) | 10.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.517 |
| SRR9715740 | Leaf | 0.200 |
| SRR9715741 | Leaf | 0.475 |
| SRR9715739 | Root | 5.413 |
| SRR9715742 | Root | 5.098 |
| SRR9715743 | Root | 4.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.124 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.134 |
| SRR8749032 | Uninduced | 0.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.512 |
| SRR8400027 | Control - Root | 18.512 |