Gene detail

Gene detail information of Glyur001099s00027736

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34480.1	9.00E-49	O-Glycosyl hydrolases family 17 protein
NR	KHN20986.1	6.60E-93	Glucan endo-1,3-beta-glucosidase 7 [Glycine soja]
Swissprot	tr\|Q9M069\|E137_ARATH	8.00E-60	Glucan endo-1,3-beta-glucosidase 7 (Precursor)
trEMBL	tr\|I1M8D6\|I1M8D6_SOYBN	3.00E-92	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G08200.1}

Sequence

Transcript Sequence

>Glyur001099s00027736.1
AAAAATTAATTTCCACTTACGTGAGAAGCTATTAGTTAAAAACAACATGATAGAAGTATTTATGAAAAAATTTATCGAAACATGGCCTAATTCTGGAACAATTTAGACTAATTTGAGCACATGGGGGTTAAACAATGGAAGTTGCCACTTTTTATTATATCTTAATTTTGATAATAATCACAAAACCCAATAGGCATGTTATGTTGTGTGTGTACTGTGTAGGTGGATGCTGTTCGGTCTGCGTTGGATTCTCTGGGGTTTAAGAATGTTGAGATTGTGGTAGCTGAGACAGGGTGGCCCTACAAAGGAGACAACGACGAGGTTGGACCAAGTCTTGAGAATGCAAAGGCTTACAACGGTAACCTGATTGCACACCTGAGATCCAAGGTTGGGACCCCACTGATGCCTGGGAAATCAGTGGACACTTACCTCTTTGCCCTTTATGACGAGGACTTGAAACCTGGACCTGCTTCTGAGAGAGCCTTTGGACTTTACAACCCTGATCAATCCATGATCTATGATGCTGGCCTCTCCAAGCAGCAGACTAGTAATACTACTACTAGCCCCAGCCCNGTCCCCACCGTGGTGGCGCCGAAGACTACTCCGGATGTGTCAAAATCTCCCGCGACCCCGACGCCAAGAGTTCCTCCAAGTCCAACAACAACAACAAGTAATAGTAGTAATGCAGCATGGTGTGTGCCAAAAGCAGGAGCAACAGATTCACAGCTACAAGCATGTTTGGATTATGCTTGTGGGCAGGGGATTGATTGTAGCTCAATCCAACCAGGAGGAGCTTGTTTTGAACCAAACACATTACTGAACCATGCTGCATATGCCATCAATCTCTTCTATCAAACTTCTGGGCGAAATCCATTAACTTGTGATTTCTCGCAGACAGCCATACTAACAACTAATAATCCAAGTTACAATAATTGTGTTTATGCTGGAGGAAATGCCTAACCTAAAAAACAAGAAAAGCAGATAAAGGAGGGCGCTTTTTTGTTGTTGTTTTAGCTTTTAATTTTTTCTCTCTCTTAATGTCTAAGGAACGTTCTGGTTTTGAGAGCACTCTGAAATAGAAGAGTAGTGCAGTACAAGAGGAGGATCTTCCTCTATTTATATTGTTTACTTTTTAATGTCTCTGTCAAGAAGCAAGCTGCTGCGTTGTTTATGTATGATGTGTGTGAACTGTGAAGCGTTGAGTCACCATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01099	88570	90826	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001099s00027736.1	PF00332.13	Glyco_hydro_17	1	40	3.10E-09
Glyur001099s00027736.1	PF07983.8	X8	97	166	5.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.913
SRR1783600	control	63.223
SRR1783602	moderate drought stress	55.841
SRR1811619	moderate drought stress	55.407

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	113.307
DRR006520	Root Summer glycyrrhizin high producing strain	112.057
DRR006521	Root Winter glycyrrhizin high producing strain	19.115
DRR006522	Root Winter glycyrrhizin high producing strain	18.358
DRR006523	Root Summer glycyrrhizin low producing strain	109.402
DRR006524	Root Summer glycyrrhizin low producing strain	109.759
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.986
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.202

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	99.286
SRR2868004	Drought Stress (root)	111.439
SRR2967015	Control (root)	72.001

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.138
SRR9715740	Leaf	10.360
SRR9715741	Leaf	10.449
SRR9715739	Root	28.127
SRR9715742	Root	74.029
SRR9715743	Root	66.512

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.946
SRR8749028	MeJA induced 9h	0.259
SRR8749029	MeJA induced 9h	0.172
SRR8749030	Uninduced	0.771
SRR8749031	Uninduced	0.183
SRR8749032	Uninduced	0.244

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.070
SRR8400027	Control - Root	38.909