Gene detail information of Glyur001099s00027725 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16580.1 | 2.00E-143 | Protein phosphatase 2C family protein |
| NR | XP_003544423.1 | 0 | PREDICTED: probable protein phosphatase 2C 55-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SUK9|P2C55_ARATH | 0 | Probable protein phosphatase 2C 55 |
| trEMBL | tr|I1M8F1|I1M8F1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G08290.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01099 | 46019 | 50299 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001099s00027725.1 | PF07228.7 | SpoIIE | 289 | 498 | 6.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.215 |
| SRR1783600 | control | 15.773 |
| SRR1783602 | moderate drought stress | 19.861 |
| SRR1811619 | moderate drought stress | 19.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.011 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.405 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.954 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.822 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.875 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.273 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.073 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.363 |
| SRR2868004 | Drought Stress (root) | 48.070 |
| SRR2967015 | Control (root) | 46.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 45.768 |
| SRR9715740 | Leaf | 50.200 |
| SRR9715741 | Leaf | 52.388 |
| SRR9715739 | Root | 30.834 |
| SRR9715742 | Root | 30.754 |
| SRR9715743 | Root | 28.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.565 |
| SRR8749028 | MeJA induced 9h | 11.128 |
| SRR8749029 | MeJA induced 9h | 16.307 |
| SRR8749030 | Uninduced | 10.982 |
| SRR8749031 | Uninduced | 13.722 |
| SRR8749032 | Uninduced | 10.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.770 |
| SRR8400027 | Control - Root | 39.465 |