Gene detail

Gene detail information of Glyur001097s00035190

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25310.1	2.00E-54	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003614589.1	4.52E-118	SRG1-like protein [Medicago truncatula]
COG	YP_167879.1	3.00E-17	oxidoreductase, 2OG-Fe(II) oxygenase family [Ruegeria pomeroyi DSS-3]
Swissprot	tr\|D4N501\|DIOX2_PAPSO	4.00E-79	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase
trEMBL	tr\|G7K0H8\|G7K0H8_MEDTR	2.00E-118	Flavonol synthase/flavanone 3-hydroxylase {ECO:0000313\|EMBL:AES97547.1}

Sequence

Transcript Sequence

>Glyur001097s00035190.1
GGAGAAAGTCAGGATTCTGAAATTCACTTCACTTCCCTTCCCCCACAAATTCAAACCCTAGCCTCCGGGAGAGGTACTTTCACTTCCAGTCCAGTGACCTCCNTGTCCGAGACCACAACCAAACGATTCCAGAGAGCACCCTAGCACTCAAATGCCAAACGTTTCAGGAGCGGTTTGTGCATCAACTCTTGCCCGAAATGGGGTTTCCGTAACGCTCTTTGAGTCAACTAGAGGCCCTGGTGGACGCATGTCCCAGAGAAGAGAGAAAACTGAAGATGGGAAGGAGCTGCATTTCGATCATGGTGCTCCATTTTTCTCAGTTAGCAAGCCTGAAGTGTTGCGTCTAGTTCAAGAGTGGAAGTCAATGGTCTCGTATCCTTTATTTGAGGAACATGGGAATGTGATTGAGGTTGCCCTGATCAAAGATAGAAAAACAGGACAGCATCGAGTTATGGATTCCCAAACTAAAAAGCTTGGAACCTCTCTCCTTGTGCCTTCTGTCCACGAGCTAGCTAAGCAGTCCCTAGCTGAAGTTCCAGAACGATATGTTTGTCCAAACCAAGATCCTACGCTTGTGCCTAACACAATCTCTTTACCACAAGTGCCAGCCATTGATTTGAATAAATTGTTGTCTGAAGATGGAACTGAGCTTGAGATGCTAGACCATGCATGCAAAGAATGGGGTTTCTTCCAGGTGATAAATCATGGAGTCAACCTTTCATTGGTGGAAAATGTAAAGACAGGTGTACAAGAAAACGATTTAGAGAGCTATTGTTTAGAAATGGAAAAACTTTGCATTACTATCATTGAACATATGGCAAAAGCTCTTAAGATCAAACCTAATGAATTACTAGAATTATTTGAAGATGTGAGTCAGTCCATGAGGATGAATTGCTACCCTCCATGTCCCCAACCAGAACATGTCATGGGTCTTAATCCTCATTCTGATGCTGGTGCTCTTACCATCTTACTACAAGCTAATGAAATTGAAGGGCTCCAAATAAGGAAAGATGGAATGTGGATTCCTATTAAACCCCTCTCTAATGCTTTTGTCATCAATGTTGGAGATATTTTAGAGATATTGACTAATGGCATTTACCGGAGCATCGAACACCGGGCAACAATCAACTTGGGGCAGGAACGAATTTCCATTGCCACATTTCATAGGCCTCAAATGCACAGAGTTGTAGGGCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01097	49652	83561	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001097s00035190.1	PF13450.1	NAD_binding_8	4	68	1.10E-10
Glyur001097s00035190.1	PF14226.1	DIOX_N	151	197	1.90E-11
Glyur001097s00035190.1	PF03171.15	2OG-FeII_Oxy	242	340	1.20E-26
Glyur001097s00035190.2	PF13450.1	NAD_binding_8	4	68	1.00E-11
Glyur001097s00035190.2	PF03171.15	2OG-FeII_Oxy	41	103	1.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.925
SRR1783600	control	14.492
SRR1783602	moderate drought stress	17.148
SRR1811619	moderate drought stress	16.193

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.652
DRR006520	Root Summer glycyrrhizin high producing strain	7.787
DRR006521	Root Winter glycyrrhizin high producing strain	3.970
DRR006522	Root Winter glycyrrhizin high producing strain	3.801
DRR006523	Root Summer glycyrrhizin low producing strain	2.202
DRR006524	Root Summer glycyrrhizin low producing strain	2.384
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.239
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.816

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.759
SRR2868004	Drought Stress (root)	17.707
SRR2967015	Control (root)	14.767

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.242
SRR9715740	Leaf	9.843
SRR9715741	Leaf	7.932
SRR9715739	Root	11.154
SRR9715742	Root	9.890
SRR9715743	Root	9.827

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.511
SRR8749028	MeJA induced 9h	1.482
SRR8749029	MeJA induced 9h	2.524
SRR8749030	Uninduced	2.542
SRR8749031	Uninduced	2.016
SRR8749032	Uninduced	1.855

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.626
SRR8400027	Control - Root	21.608