Gene detail information of Glyur001095s00030008 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21280.1 | 8.00E-16 | |
| NR | KHN05285.1 | 2.17E-167 | Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja] |
| Swissprot | tr|P10978|POLX_TOBAC | 1.00E-26 | Endonuclease |
| trEMBL | tr|Q2HT49|Q2HT49_MEDTR | 9.00E-116 | Integrase, catalytic region {ECO:0000313|EMBL:ABD32757.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01095 | 6957 | 9518 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001095s00030008.1 | PF14244.1 | UBN2_3 | 62 | 99 | 8.00E-09 |
| Glyur001095s00030008.1 | PF00665.21 | rve | 427 | 491 | 1.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.047 |
| SRR1783600 | control | 0.086 |
| SRR1783602 | moderate drought stress | 0.090 |
| SRR1811619 | moderate drought stress | 0.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.583 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.449 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.212 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.948 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.750 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.546 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.691 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.867 |
| SRR2868004 | Drought Stress (root) | 12.360 |
| SRR2967015 | Control (root) | 11.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.028 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.014 |
| SRR9715739 | Root | 0.166 |
| SRR9715742 | Root | 0.039 |
| SRR9715743 | Root | 0.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.512 |
| SRR8749028 | MeJA induced 9h | 9.589 |
| SRR8749029 | MeJA induced 9h | 4.082 |
| SRR8749030 | Uninduced | 2.505 |
| SRR8749031 | Uninduced | 2.192 |
| SRR8749032 | Uninduced | 1.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.092 |
| SRR8400027 | Control - Root | 0.033 |