Gene detail information of Glyur001095s00030006 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52590.1 | 2.00E-45 | ubiquitin extension protein 1 |
| NR | XP_008360574.1 | 1.11E-55 | PREDICTED: ubiquitin-60S ribosomal protein L40 [Malus domestica] |
| COG | YP_004104012.1 | 9.00E-31 | ubiquitin [Ruminococcus albus 7] |
| Swissprot | tr|P51423|RL40_BRARP | 1.00E-57 | 60S ribosomal protein L40 (Precursor) |
| trEMBL | tr|K7KG22|K7KG22_SOYBN | 8.00E-56 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G35540.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01095 | 2007 | 3951 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001095s00030006.1 | PF00240.18 | ubiquitin | 6 | 64 | 5.70E-30 |
| Glyur001095s00030006.1 | PF01020.12 | Ribosomal_L40e | 58 | 98 | 3.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 65.930 |
| SRR1783600 | control | 64.148 |
| SRR1783602 | moderate drought stress | 45.827 |
| SRR1811619 | moderate drought stress | 44.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 111.178 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 111.806 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 65.259 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.142 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 45.089 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 44.641 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 56.495 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 56.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 94.400 |
| SRR2868004 | Drought Stress (root) | 75.082 |
| SRR2967015 | Control (root) | 70.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 43.579 |
| SRR9715740 | Leaf | 43.684 |
| SRR9715741 | Leaf | 40.679 |
| SRR9715739 | Root | 15.771 |
| SRR9715742 | Root | 32.966 |
| SRR9715743 | Root | 27.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 188.025 |
| SRR8749028 | MeJA induced 9h | 134.135 |
| SRR8749029 | MeJA induced 9h | 158.362 |
| SRR8749030 | Uninduced | 60.101 |
| SRR8749031 | Uninduced | 35.833 |
| SRR8749032 | Uninduced | 36.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 90.226 |
| SRR8400027 | Control - Root | 82.252 |