Gene detail information of Glyur001094s00031553.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11090.1 | 3.00E-49 | LOB domain-containing protein 21 |
| NR | XP_007163564.1 | 9.02E-103 | hypothetical protein PHAVU_001G244700g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SRL8|LBD21_ARATH | 7.00E-63 | LOB domain-containing protein 21 |
| trEMBL | tr|V7D1K4|V7D1K4_PHAVU | 3.00E-103 | Uncharacterized protein {ECO:0000313|EMBL:ESW35558.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01094 | 36630 | 37187 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001094s00031553.1 | PF03195.9 | DUF260 | 11 | 110 | 8.70E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.777 |
| SRR1783600 | control | 0.842 |
| SRR1783602 | moderate drought stress | 0.613 |
| SRR1811619 | moderate drought stress | 0.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.923 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.426 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.120 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.193 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.382 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.342 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.407 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.666 |
| SRR2868004 | Drought Stress (root) | 2.568 |
| SRR2967015 | Control (root) | 1.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.200 |
| SRR9715740 | Leaf | 3.945 |
| SRR9715741 | Leaf | 2.281 |
| SRR9715739 | Root | 0.072 |
| SRR9715742 | Root | 0.308 |
| SRR9715743 | Root | 0.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.120 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.611 |
| SRR8749031 | Uninduced | 0.600 |
| SRR8749032 | Uninduced | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.892 |
| SRR8400027 | Control - Root | 2.023 |