Gene detail

Gene detail information of Glyur001093s00031282

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23980.2	5.00E-151	auxin response factor 9
NR	KEH22928.1	0	auxin response factor 2 [Medicago truncatula]
Swissprot	tr\|Q9XED8\|ARFI_ARATH	0	Auxin response factor 9
trEMBL	tr\|A0A072U1C1\|A0A072U1C1_MEDTR	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur001093s00031282.1
ATGTTGAATCGTGGAGAAGAAGATGAGCTCTATGAACAACTATGGAAGGCATGTGCAGGATCCAATGTTGAAGTTCCTCGTGCAGGACAAAGGGTCTTCTATTTTCCTCAGGGACACATGGAACAATTAGAAGTATCAACAAATCAGGAACTAAATCAGAGGATTCCATTGTTCAATCTTCCCACTAAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTCTGGTGCCAGAATCTAATCAAACTGAGCCTACAAGCCTTGATCCATGCCCTGCTGAACCTCCGAGACCGAGAACTCACTCTTTCTGCAAGGTCTTAACTGCCTCTGATACCAGTACCCATGGTGGCTTCTCTGACATGTCCCAATCAACCCCAACTCAGGAATTGGTTGCCAAGGATCTTCATAATTATGAATGGCACTTTAAGCATATATTTAGAGGGGATAATGGAGAATTACGTGTTGGAGTGAGGCGTCTTGCTCCTCCGCAGAGCAGCATGCCTTCATCTGTGATTTCAAGCCAGAGCATGCACCTTGGAGTCCTTGCAACTGCATCTCATGCTGTTGCAACTCAGACTCTTTTCGTAGTATATTATAAGCCCAGGATGAGCCAGTTCATTGTAAGTGTGAACAAGTATTTGGAAGCTATCAACCAAAAATCTAGTGTTGGCATGAGGTTCAAGATGAGTTTTGAGGGGGATGATTCCACTGAGACTGACAAAAGATTTTCGGGCACAATAATTGGAGTCGAAGATATTTCTCCTTACTGGGCAAATTCAAAATGGCGATCACTTAAGGTTCATTGGGATGAGCCAGCATCTATCACAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCCTTCTGGCTTCTGTTCCCGCATCTTTAGTTCAACCTTCTGTTGTAAAATATAAAAGGCCTCGACCACCCAGTGAAGTTCCAGGTCTCGGAGACACAGCATTAGGCGACTCTACTTTCTGGGACACTGGGCTGACACAATCAGATGTAACTCAAGTTAATGTTATGGCCGAAAGCAAAAGGAGCGACACTAGTACCCATTTGTGGCATCATAAGCAGACCGATAATAGCAAAAGCAGCAGCAATGGTATATCGAGGAATCAGATAGAAGGAAGTTGGCTATCTTCTCCTCATTCTAGCAGTCCGTCTCATTTGTGTCAGGACACTACCGATGATGGCAAGAGTTTCTCGGTGTCAGCTTGGCCTATTTCGAAAACTCGCTCGGAAATAGTGAACAAAAATCATTTGCTTGACCAAGTTGACAAGGAGAACAAAGTAGAGGCTGCTGCTACAAGCTGTAGATTGTTTGGGATTGAGCTTATCGATCATCCCAGGAACTCTCAAAAGGCATCTGGGGTCCCAGGAACCGATGCAAACCGTCAGTCTGATATCTCAAAGGCTTCGAAAGAAAGGAAGCAAGAACAGCTGCAAGCATCTCCAAAAGAAACTACAAGCAAGCAAATATGCAACAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCGGTGGGTCGTGCGGTGGACTTGACCACGCTGTACGGGTATGATCAACTTATAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCAACCCAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTGGGGGATGATCCATGGCCGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01093	59414	62948	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001093s00031282.1	PF06507.8	Auxin_resp	197	278	1.90E-27
Glyur001093s00031282.1	PF02309.11	AUX_IAA	465	576	4.00E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.105
SRR1783600	control	5.975
SRR1783602	moderate drought stress	3.508
SRR1811619	moderate drought stress	3.559

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.060
DRR006520	Root Summer glycyrrhizin high producing strain	4.990
DRR006521	Root Winter glycyrrhizin high producing strain	0.064
DRR006522	Root Winter glycyrrhizin high producing strain	0.062
DRR006523	Root Summer glycyrrhizin low producing strain	2.048
DRR006524	Root Summer glycyrrhizin low producing strain	2.424
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.073
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.041

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	82.377
SRR2868004	Drought Stress (root)	102.784
SRR2967015	Control (root)	72.182

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.924
SRR9715740	Leaf	0.363
SRR9715741	Leaf	0.528
SRR9715739	Root	2.065
SRR9715742	Root	5.044
SRR9715743	Root	4.557

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.694
SRR8749028	MeJA induced 9h	0.655
SRR8749029	MeJA induced 9h	0.526
SRR8749030	Uninduced	0.157
SRR8749031	Uninduced	0.133
SRR8749032	Uninduced	0.199

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.344
SRR8400027	Control - Root	17.410