Gene detail

Gene detail information of Glyur001092s00028393

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47850.1	0	CRINKLY4 related 4
NR	XP_004506371.1	0	PREDICTED: serine/threonine-protein kinase-like protein CCR4-like [Cicer arietinum]
COG	YP_001277089.1	6.00E-21	protein kinase [Roseiflexus sp. RS-1]
Swissprot	tr\|Q9FIJ6\|ACCR4_ARATH	0	Serine/threonine-protein kinase-like protein CCR4 (Precursor)
trEMBL	tr\|C6ZRU3\|C6ZRU3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G00460.1}

Sequence

Transcript Sequence

>Glyur001092s00028393.1
ATGGCTTTTCCTCATAACTACTCCTTCAGGTTCTGCTACTACCTTTTCATTCCCTTGTACTTCTTCCTTTCCTCTCTTCCAATCATAAACACCCTTTCAACTGTTTCCATTTCTGAAACACCCAACCAAACACTTATTTGTGCCTTACAACATAACCCAAACCAACAACAAGGACAGTCAAATCTCAACTGTACTAGCTTCCCTCTCGGTAATACTATTGGACTTGAATTGAATCCAAATGTTTCCTACTCTGAGATTGTGGGTGGCAATGGGTTTCTATGTGCATTAAGGCCACCATCTTCTTCTACTTCCATCATGGGGTGTTGGAGATTCTCTTCCAATAATGCTACTACCACCACTAATGTTCCCTATAAGAGAATCTACCATGGACCCATCATTGAAGATTTTGATGGTGGGAATTCCCATGTTTGTGGTCTTGTAAGATCAGGGAACAACAATAGCCTTGGCCTTGGACTTGAGTGTTGGCAATGGCCAGGATTCAATTCAAGCANGGGAAGGAACATCAACATGTCAAGCATATCAGTGGGAGAGGATTTTGTGTGTGGCTTATCAGAAAAAGGGAAGGTTGCTTGCTTGGGGGGTAACAATAGAGTTGTTGGGTATGAGCCTAGTGGAAACTACTCTGTAGTTGAAGCTGGGTTTAATCATGCTTGTGCTATCTCTAGTGATGGTAGCTTGGATTGTTGGGGAGACATGGTGGGTGAGAAACCACAAGGGAGATTCATCTCTTTGGCTTTGGGAGAGAACCGAAGTTGTGCACTTGGTTATAATGGAATAGTTACTTGTTGGGGTTCCAACAATTTCAGCATGCCACAGAGATTGAAAGGGACTTTCTTTGAAGCAATTGTTGCAAAGAGAAGTGTTTTCTGTGGTGTTGTGTCCTCTAATTACTCTTTGCTTTGTTGGGGTACTGAGATTGTTGAGTCCAATACCAACAAGGTGGTGTTTGATAATGTCCTCCCAGGACCTTGTAGGAATCAATGTCCATGTGGACCCTTGTCAGATTCAGCTAAATTCTGTGACTCACCAGCCATCATTTGCAAGCCTTGTCAACCAGAAGTTGAATTTCCAACACAGCAACCGCAAGCGCAACCACCACCGCCGGCGCCATCTCCACCGCGCCAAACCGAGGGGGAAAGTGGTTGGAGCAACAAAATGGTGGCATTTCTGGTAGTTGGATGTGTTGGTTGCAGTTCCTTGTTGCTAGTCTTGGCTTTCTTCCTTTACAGATACTGCAAAGGCACAGTGTGCCGTGTCCATGACTCTGGTCGATTAGATAATGAATCAGAAGAAGCTCAAGCTAGAACTGGAACTGTCACTGCAGTTTTAGAGAAGCGTTTGAGCCATGTAATTAGCATGGGAAATGGGGGTAGCAATTTAGAGGAATTCACCTTACAAGCACTTCTCCAAGCCACCAACAATTTCTCTGAGGAGAACAAAATTGGGGTTGGAAGCTTTGGTTCAGTGTACCATGCAACACTAGAAGATGGAAAAGAAGTTGCTATAAAAAGAGCTGAAATGTTTCAAACCACTTCTACATCCAATGCTGCAGTCTTGGGTGTTAACACCACCAAAAGGCAAGAGGACAAAGACAATGCCTTTGTGAATGAGCTTGAGTCACTCTCAAGACTCCACCACAAGAACCTAGTCAAATTACTTGGTTTCTATGAAGACAACAAAGAAAGAATCTTGGTCTATGAGTACATGAACAATGGTAGCCTAAGTGATCACCTCCACAAGCACCAAAGTTCTGTTTTTCTCAATTCATGGGTAANTAGAATAAAAGTAGCACTAGATGCAGCTAGAGGCATAGAGTATCTACACCAATATGCNACCCCACCAATCATTCACCGTGACATTAAATCCTCAAACATATTGTTGGATTCAAANTGGATGGCCAAAGTTTCTGATTTTGGGTTATCATTGATGGGTCCTGAAGATGAGGAATCACACATTTCACTATTAGCAGCTGGAACNGTTGGTTACATGGACCCTGAATACTATAGGCTTCAACATTTGACCACAAAGAGTGATGTGTATAGTTTTGGTGTGGTCTTGCTTGAACTCCTATCTGGGTACAAAGCTATACATAAAAATGAAAATGGGGTGCCAAGAAATGTGGTTGATTTTGTGGTACCCTTTATTATGCAAGATGAGATTCATAGAGTTTTGGACCCAAAGGTGCCACCACCAACACCGTTTGAGATTGAGGCTGTGGCGTTTGTTGGGTACTTGGCTTCTGATTGTGTTCGTCTAGAAGGTAGAGAGAGACCAACAATGACACAAGTTGTGAATAGCTTGGAAACAGCACTTGCCGCGTGTTTGGCACAACCAATGCTATCNAGGTCCACAACAACAAACACTGCTTCTTCAGAATACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01092	60326	62728	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.4.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001092s00028393.1	PF13540.1	RCC1_2	217	238	2.10E-05
Glyur001092s00028393.1	PF00069.20	Pkinase	484	773	5.30E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.789
SRR1783600	control	0.794
SRR1783602	moderate drought stress	0.344
SRR1811619	moderate drought stress	0.358

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.859
DRR006520	Root Summer glycyrrhizin high producing strain	45.901
DRR006521	Root Winter glycyrrhizin high producing strain	1.202
DRR006522	Root Winter glycyrrhizin high producing strain	1.171
DRR006523	Root Summer glycyrrhizin low producing strain	41.838
DRR006524	Root Summer glycyrrhizin low producing strain	41.688
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.039
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.912

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.053
SRR2868004	Drought Stress (root)	5.157
SRR2967015	Control (root)	13.467

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.936
SRR9715740	Leaf	69.238
SRR9715741	Leaf	63.241
SRR9715739	Root	47.807
SRR9715742	Root	73.552
SRR9715743	Root	66.001

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.338
SRR8749028	MeJA induced 9h	41.199
SRR8749029	MeJA induced 9h	22.840
SRR8749030	Uninduced	73.129
SRR8749031	Uninduced	27.560
SRR8749032	Uninduced	25.655

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.102
SRR8400027	Control - Root	7.694