Gene detail

Gene detail information of Glyur001092s00028389.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54280.1	0	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases
NR	XP_003540105.1	0	PREDICTED: TATA-binding protein-associated factor BTAF1-like isoform X1 [Glycine max]
COG	YP_004651865.1	2.00E-76	hypothetical protein PUV_10610 [Parachlamydia acanthamoebae UV-7]
Swissprot	tr\|B5BT18\|BTAF1_ARATH	0	TATA-binding protein-associated factor BTAF1
trEMBL	tr\|K7LS80\|K7LS80_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G00450.3}

Sequence

Transcript Sequence

>Glyur001092s00028389.1
ATGCAAAATGCTGAAAAGAAACGAGCAGCAGTTATGCTAGATCTGCACATAAGATACTCATTAGAAGAAAGAGCCATTATTGAAAGGCATAGAGCTGGCTCAACCCAAGCAACAAGGTTGACTGCTGCTCGGCAGATCGGGGACATTGCAAAATCACATCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTNCGCAGTAAAAATTGGGATACAAGAGTTGCAGCTGCTCATGCAATTGGGTCTATTGCTGAGAATGTTAAGCACATAAGTTTGAATGAACTTATTGCTTCTGTTGTATCAAAAATATCGGAGAATGGGATATCTTGTAGTATTGAGGATCTATGTGCATCNCCTTATTTGCAAGCAAAATTTACAGGAAGCTCATTTAGAAGCTTTGATATGAATAAGGTACTTGAATTTGGAGCTTTGTTGGCATCCGGAGGACAGGAATACGATATTGGAAGTGATAATATAAAGAACCCAAAGGAGCGATTGGTTCGCCAGAAGCAAAATCTTCGACGCCGTTTAGGTTTGGATGTCTGCGAACAATTTATGGATATCAATGATGTAATAAGAGATGAAGACCTTATGGCACACAAATCAGACTCACATCTCAATGGTATAGATCATAAAGTTTTTNCATCTTATTCTGTACATAACATCCAGAAAATGGTTGCAAATATGGTTCCTAGTGTCAAATCAAAGTGGCCGAGTGCAAGAGAACTGAATCTTTTAAAACGCAAAGCAAANTCAAAGGACCAAACAAAAAGCTGGTGCGAAGATGGAAGTACAGAGGCTTCAGGTGCTCAAAATTTGACTTNGAAAGGCACATGTCCTGATTCAGTAAATTACAGCAAGGCATTCGTGGATGTTAATCATGATGAAGATGGCTTTGAGCATGATGGAGATGGACAATGGCCTTTCATTTGGGAGGTACGACATGGTAGCGTGATGGCACTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGAGTATTTAAACATGACTCACACTTGAGTGGGGCCTTGTTTGTTGAGTTAGAAGACAAAANTATATCAAATATATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTTTCAGCAGATGAGTGTGTCTTGAACTTGAAGAGGCCGAAACTCGAAGATGTATCATCATCAACCTCTATAGATAGTGTGATGACTTGCAGCAANGAAGGTGATATTGAAATCAGCATAAGTTCTGAAACCCAGGGATGCAATTTACCTTTGGATCACAGGAATGGGAAATTTAATGGTAATTCTATTGACATGGATCTGGAGTCTCAATCTGATGGATTGCATGATGCATGCAAGGAACTTGCTAATATAGCAGAGCAGAAGGGTTACTCTGATGACAATAAGNTTCCCTCTGGAAATCCTAATATGCTGAGAAATCTTCCTCAGAATTCTGAGCCGTTGAACTTGGTTAAAGTGGCTAGAAGTTCCTGGCTTCGAAACAGTGAATTTCTTCAAGATTGTGTGATACGCTTTTTGTGTGTTTTGTCACTTGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCGCAGGCATTAGGTGCTGCATTTAAGTATATGCATCCAGCTCTAGTAAATGAAACATTTAACATATTGTTGAAAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGATGCTTTCCGATTTGCTTGAACGTGTTCTTCCTGCATGTAAATCTGGNTTGGAGGATCCAGACGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCAGGGTCAAACACTGCATTCAATTGTGATGCTGTTGTGGGATATATTNCTTGATCTGGATGATTTAAGTCCATCCACTAGCAGTGTAATGAATCTGCTGGCAGAANTCTATTCTCAAGAAGAGATGGTCCCGAACATGTATAAAGTTTTTAAATNGGAAGACAATGAAATGGAAAATGGAGCTGGTGGTTGTGATGATGATGGAGAAGAAAATCCTTATGTGCTTTCAACTTTGGCACCACGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTATTCAGCAATACGGACTCTGGAGAGGCTACTNGAAGCTGGATATAAGAGAAGCATGTCTGAGCTGTCTAGTGGTTCNTTTTGGCCCTCTTTTATATTCGGAGATACCCTTAGAATTGTCTTCCAGAATCTGCTATTGGAAACGAATGAGGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTGGTTCAGTGTTCTGTGGAGGACCTGGAGACAGCTGCAAGGNCTTACATGACTTCTTGGATAGAACTTGCATCTACACCTTTTGGTTCAGCATTAGATGCCTCAAAGATGTATTGGCCTGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCTGTGAAGATCGAAAATGAATATGGTGGGGATTTTGGTCTTGATTCTACAAAAGCAACTATTCCACCAGATAGAAATGGAGATGTTACTATGAGTTCCATTAAGATAGTTGTTGGTGCTGATGTGGACACATCTGTAACTCGTACTCGGGTGGTTACAGCAACTGCTCTGGGAATTTTTGCTTCTAAGTTGCCAGAGGGTTCTTTAAAGTATGTGATTGATCCACTCTGGAGCTCACTAACCTCTTTGTCAGGTGTCCAACGCCAGGTTGCTTCTATGGTGCTTATTTCTTGGTTCAAGGAGATTAAGAACAGGAATTTGTCTAAAAATATTAATGGTATTCCTGCTGCCCTCAAAGACTGGTTGCTGGACTTGTTAGCATGTTCTGACCCANCATTCCCAACAAAAGGTTCAGTTCTTCCTTATGCCGAGCTTTCAAGAACTTATTCAAAGATGCGTAGTGAGGCTGGTCAGTTGCTAAATGCAGTCAAGTCTTCTGGTATGTTCAGTGAGTTATTGACAACAACCAAAATTGAGTCGGATAGCTTGAGTGTGGATGATGCAATTGGTTTTGCATCAAAAATTCCAGCTTTGTGTAATGATAGTTCTGCANATGAATCTTTGGGAAAGTACACTATGGATGATATTGAATCCTCAAAACAGAGGCTCTTAACAACTTCTGGCTATTTGAAATGTGTTCAGGTTGTTGACATGCTTATTTCTGGTNTATGGGATGATTTGCAGAGTAATTTGCATGTTACGGTCACATCTGCAATTGCAGCTGCAGTTGTCTGGATGTCTGAATTTCCCACACGACTCACCCCTATCATTTTGCCTTTGATGGCTTCGATCAAACGAGAGCAGGAGGANATACTGCAAATGAAGTCAGCTGAGGCTCTTGCTGAGCTAATGTATCATTGTGTTACACGTAGACCTTGCCCCAATGATAAATTNATCAAGAACATATGTAGTTTGACTTGCATGGATCCCTCTGAGACCCCTCAAGCTAAATCCATTTGTTCNATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTTTAGAACTCCTGTGAGCAAACAGAAGTCAAAGGTCCATGTGCTGGCTGGTGAAGATCGGTCAAAGGTGGAGGGATTTTTAAGTAGNCGAGGATCTGAGCTTTCATTGAGGCTTCTGTGCGAGAAGTTTGGTGTTTTNTTATTTGATAAGCTTCCTAAGCTATGGGATTGCCTTACTGAGGTGCTTAAGCCAAGCTCCTTTGAATCTCTACTTGCTTGTAATGAAAAGCAAGCTACTGTGACTATNGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTGGTGCGGTCTGTTGCTCCCTTGTTAAATGAGGAGTTGAAGCCAAAACTTCTGACACTTCTCCCATGCATTTTTAAATGTGTTCAGCATTCTCATGTTGCAGTAAGACTAGCTGCGTCACGCTGCATCACTTCNATGGCCCAGTCAATGACTGTGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCATCATCAGTTCATGCTCGACAAGGAGCAGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTAGGTGTAGAGTTGGTCCCTTATGCTCCTCTGTTAGTGGTACCACTTCTAAGATGCATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTCACCCATAGTTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCACGAGGCCTTCCTCAACCAATTGGATTAGGGGAAGGTATATCTAGAAATGCAGAAGATCTACATTTTCTGGAGCAACTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAGCAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGAACTCAATTTGGGAATGAGGATCTTCTGCCATCTTTAATTNTTTGCCCATCAACACTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCGGTTATATCTAGTCTTCAGTATGTNGGTTCTGCTCAGGAGCGAATGCTTCTTCGAGATAATTTTTGCAAGCATAATGTCATTATAACATCATATGATGTTGTCCGTAAAGATGTTGATTATTTGGGACAGCTGCTGTGGAATTACTGCATTTTAGATGAAGGACATATAATAAAAAATGCNAAGTCTAAAGTTACTTTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCAATACAGAATAACATAATGGACTTGTGGTCCCTTNTTGATTTTCTGATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAGGAACATATGGAAAACCACTTTTAGCCGCAAGAGATCCCAAGTGCTCTGCTAAGGACGCTGAAGCTGGAGCACTNGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGTAGGACAAAGGATGAAGTCTTATCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTAACTTGAGCCCTGTACAACTCAAACTTTATGAACANTTTTCGGGTTCTCGTGCAAAACAAGAAATGTCATCTATTGTGACAACAAATGAGTCAGCTGCAGCAGAAGGAAGTAGCAGTTCCACTAAAGCATCTTCACATGCACTCCAATANCTGCTAAAACTCTGTAGTCATCCATTACTTGTCATTGGTCAGAAGATTCCAGATTCGCTCTCTGACATCCTCTTGGGACTGTTTCCTGCTGGGTCTGATGTCATTTCAGAACTTCACAAACTCCATAACTCCCCAAAATTAGTTGCTCTTCTTGAGATTCTTGAAGAGTGNGGAATTGGAGTTGATGCTCCAGGTTCTGAGGGTGCTGTTAGCATTGGGCAGCATAGGGTCTTGATATTTGCTCAACATAAGGCGTTCTTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAATGTCACATATTTGAGGCTGGATGGATCAGTTGAGCCAGAAAAGCGTTTTGAAATTGTNAAAGCTTTCAATTCAGACCCTACCATTGATGTCTTACTGCTTACGACACATGTGGGTGGGCTTGGTTTGAACCTGACATCGGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCTATGCGCGATCTTCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAANGTAGTTAATGTCCATCGTCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGGTTCAAAGTGTCAGTGGCTAATGCTGGGTCTTCTGTTGTCAAGAGTTCAGAGGACAACACNGATGGAGACACTAAACTAGTAGGCAGTGGAAAGGGGTTGAAAGCAATACTTGGGGGATTGGAGGAGCTATGGGACCAATCNCAATATACAGAGGAGTACAATCTGAATCAATTCTTGGCGAAGCTTAATGGCTAATGTTNCAGATTCATTTCAGAGTCGGAGTGTACATATTCCAAGACTACAAATTTTGACATTGTAACCATCTCAATTTTTTTCCCCCATTCCCTTCACTCATTTTTTTTGTCGTCACTTTTTGAATACCCCAATGCTGGCATCTGCTAGGGTCGTGTGTGCATGCATGCAAGTAAATCAATGTCTGTATTTTACAGGGCGTTGAGGAGAGNGAGGTTTGATTGACCGATTGGTGGAAGCCCTTGGTGGTGTGAAATGTAGAGATATGAACTAGTGACGGCTTTGGGAGGGGATGGAGTAAATTTTTTTTTTCTTTTTGGATTTTGTACATATACAATCAATCCTAATTATAGTTATAGTCGTTGCTAACATGAAATACCTCACA

Protein Sequence

>Glyur001092s00028389.1
MQNAEKKRAAVMLDLHIRYSLEERAIIERHRAGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLNELIASVVSKISENGISCSIEDLCASPYLQAKFTGSSFRSFDMNKVLEFGALLASGGQEYDIGSDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLMAHKSDSHLNGIDHKVFXSYSVHNIQKMVANMVPSVKSKWPSARELNLLKRKAXSKDQTKSWCEDGSTEASGAQNLTXKGTCPDSVNYSKAFVDVNHDEDGFEHDGDGQWPFIWEVRHGSVMALREILTHQGASAGVFKHDSHLSGALFVELEDKXISNILKREREIDLNMQVSADECVLNLKRPKLEDVSSSTSIDSVMTCSXEGDIEISISSETQGCNLPLDHRNGKFNGNSIDMDLESQSDGLHDACKELANIAEQKGYSDDNKXPSGNPNMLRNLPQNSEPLNLVKVARSSWLRNSEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETFNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLERVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDIXLDLDDLSPSTSSVMNLLAEXYSQEEMVPNMYKVFKXEDNEMENGAGGCDDDGEENPYVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSSGSFWPSFIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSVEDLETAARXYMTSWIELASTPFGSALDASKMYWPVAFPRKSQFRAAAKMRAVKIENEYGGDFGLDSTKATIPPDRNGDVTMSSIKIVVGADVDTSVTRTRVVTATALGIFASKLPEGSLKYVIDPLWSSLTSLSGVQRQVASMVLISWFKEIKNRNLSKNINGIPAALKDWLLDLLACSDPXFPTKGSVLPYAELSRTYSKMRSEAGQLLNAVKSSGMFSELLTTTKIESDSLSVDDAIGFASKIPALCNDSSAXESLGKYTMDDIESSKQRLLTTSGYLKCVQVVDMLISGXWDDLQSNLHVTVTSAIAAAVVWMSEFPTRLTPIILPLMASIKREQEXILQMKSAEALAELMYHCVTRRPCPNDKXIKNICSLTCMDPSETPQAKSICSMESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSXRGSELSLRLLCEKFGVXLFDKLPKLWDCLTEVLKPSSFESLLACNEKQATVTXESVSDPQTLINNIQVVRSVAPLLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSMAQSMTVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGISRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTQFGNEDLLPSLIXCPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERMLLRDNFCKHNVIITSYDVVRKDVDYLGQLLWNYCILDEGHIIKNAKSKVTFAVKQLKAQHRLILSGTPIQNNIMDLWSLXDFLMPGFLGTERQFQGTYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCNLSPVQLKLYEXFSGSRAKQEMSSIVTTNESAAAEGSSSSTKASSHALQXLLKLCSHPLLVIGQKIPDSLSDILLGLFPAGSDVISELHKLHNSPKLVALLEILEEXGIGVDAPGSEGAVSIGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKXVVNVHRLIMRGTLEEKVMSLQRFKVSVANAGSSVVKSSEDNTDGDTKLVGSGKGLKAILGGLEELWDQSQYTEEYNLNQFLAKLNG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01092	23745	45971	+

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005488 binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001092s00028389.1	PF13513.1	HEAT_EZ	567	618	0.00029
Glyur001092s00028389.1	PF12054.3	DUF3535	781	1250	2.80E-93
Glyur001092s00028389.1	PF00176.18	SNF2_N	1469	1777	9.20E-66
Glyur001092s00028389.1	PF00271.26	Helicase_C	1867	1941	7.80E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.762
SRR1783600	control	5.754
SRR1783602	moderate drought stress	5.269
SRR1811619	moderate drought stress	5.164

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.907
DRR006520	Root Summer glycyrrhizin high producing strain	6.761
DRR006521	Root Winter glycyrrhizin high producing strain	6.716
DRR006522	Root Winter glycyrrhizin high producing strain	6.644
DRR006523	Root Summer glycyrrhizin low producing strain	5.917
DRR006524	Root Summer glycyrrhizin low producing strain	5.922
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.024
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.069

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.760
SRR2868004	Drought Stress (root)	16.361
SRR2967015	Control (root)	15.429

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.133
SRR9715740	Leaf	9.680
SRR9715741	Leaf	12.268
SRR9715739	Root	1.577
SRR9715742	Root	12.385
SRR9715743	Root	11.349

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.124
SRR8749028	MeJA induced 9h	10.950
SRR8749029	MeJA induced 9h	5.712
SRR8749030	Uninduced	6.517
SRR8749031	Uninduced	6.091
SRR8749032	Uninduced	4.223

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.613
SRR8400027	Control - Root	15.053