Gene detail information of Glyur001091s00033715 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25340.1 | 1.00E-35 | FK506 BINDING PROTEIN 53 |
| NR | KEH29261.1 | 0 | FKBP-type peptidyl-prolyl cis-trans isomerase [Medicago truncatula] |
| COG | YP_002354691.1 | 2.00E-22 | peptidylprolyl isomerase [Thauera sp. MZ1T] |
| Swissprot | tr|F4J9Q6|FKB43_ARATH | 9.00E-44 | Peptidyl-prolyl cis-trans isomerase FKBP43 |
| trEMBL | tr|A0A072UIJ4|A0A072UIJ4_MEDTR | 0 | Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01091 | 37643 | 46422 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001091s00033715.1 | PF00254.23 | FKBP_C | 554 | 642 | 1.40E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.864 |
| SRR1783600 | control | 5.875 |
| SRR1783602 | moderate drought stress | 6.896 |
| SRR1811619 | moderate drought stress | 6.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.946 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.647 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.447 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.893 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.714 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.892 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.948 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.734 |
| SRR2868004 | Drought Stress (root) | 8.207 |
| SRR2967015 | Control (root) | 8.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.142 |
| SRR9715740 | Leaf | 3.200 |
| SRR9715741 | Leaf | 3.211 |
| SRR9715739 | Root | 0.350 |
| SRR9715742 | Root | 3.657 |
| SRR9715743 | Root | 2.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.210 |
| SRR8749028 | MeJA induced 9h | 17.981 |
| SRR8749029 | MeJA induced 9h | 30.850 |
| SRR8749030 | Uninduced | 4.546 |
| SRR8749031 | Uninduced | 10.430 |
| SRR8749032 | Uninduced | 17.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.015 |
| SRR8400027 | Control - Root | 7.335 |