Gene detail

Gene detail information of Glyur001091s00033712

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G09040.1	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004516045.1	PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Cicer arietinum]
Swissprot	tr\|Q9SS83\|PP220_ARATH	Pentatricopeptide repeat-containing protein At3g09040, mitochondrial (Precursor)
trEMBL	tr\|I1LNN3\|I1LNN3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G00310.1}

Sequence

Transcript Sequence

>Glyur001091s00033712.1
ATGCGCGTAGCAGTTGGAGTGAAATGTTTGTTGAGACGATATTATTATCATTCGCGTTTTCCAAAGTCACAAGTGTTCAAGCCCCGCCACTTGCTCGATGAAATCCCTCACTCCAAGTGCGGCAACGATGACAATTGGAATTCCCTCATTTCCACGTACTCNAGGCAAGGCTTGTTGGAAAGAGTTCTTCACTGTTACACCTCCTTTATAAACTCAGGCCAATTCCCCGACGAGCACACTCTTTCCATCACACTCTCTTGCTGTGCGAAACTCGAGAACATCAAGTTTGGCAGGTTACTTCACTCTTGCGTAATCAAGAGCGGATTCGAGTTCAGTTCATTATTCTGTCAGCAAGGCCTTATCCATCTCTATGCCAAATGCAACTGCGTGAGTTNTGCTCGAACCATATTCGATGCCGCGTTCACGTTGCTACGCTTCGACGCGGCTTCCTGGACCGCTTTGATCTCTGGTTATGTCCAGGCTGGTTTGCCACAGGAGGCGCTCCACGTGTTTGACGAAATGCAGAGGAATGGTTGTTGTCACGTGGACCACGTTGCGTTCGTGACCGCGCTGAATGCTTACGTGGCTTCGGGGAACCTGGATGGCGCGTGTGAATTGTTTGAACAGACACGGTGGCAGACAGCCCGCGGCAATGTTGTGGCTTGGAATGTCATGACCTCTGGTCATGCCAAGAGAGGACACTATAAGGAGGCTGTTGCATTCTATGTGAGAATGAGGAAGCATGGCGTGAAATCGTCGCGGTCCACGCTCGCAAGCGTCTTGAGCGCGGTCGCCGGTTTGGCCGCCTTGGACATTGGCCTGCTAGTTCATGCTGAGGCTATCAAACAGGGTTTTGAGTCCAGTGTCTATGTTGGGAGTTCTCTNATCAATATGTATGGGAAGTGTGAAATGCTGCGTGCTGCGGAGCAAGTGTTCGATGCAATGTCTAACAAGAATATGGTCTTGTGGAATGCCATGCTTGGAGTTTATGCTCAGAATGGTTGTTTAGGCAATGCCATGGCATTGTTCTCTGATATGATAGCATTTGGAAATGGAATNATTGACCCGGATGAATTTACATACTCTAGCATTCTGAGTTCGTGCGCTTGCTCTGAATTCCTATGTATCGGTCGCCAGTTGCATTCGACGATTATCAAGAAAAGGTTCACAGCCAATTTATGTGTAAACAATGCGTTGGTAGATATGTATGCTAAGGCTGGGGCTTTGAAGGAAGCAAGGAAACAGTTTGAGTGCATGAAATATCNAGATAATATTTCCTGGAATGCCATTATCGTCAGTTACGTGCAAGAAGAGGAGGAAACTGAGGCTTTCGACATGTTTCGGAGAATGAATTTACATGGAATGGTACCTGATCAGGTATCTTTGGCCAGTATACTTAGTGCCTGTGGAAATCTTAAGGTACTGGAAGCAGGACAGCAGTTCCATAGCCTTTCAGTTAAGTTGGGTTTAGAGACAAACCTTTTTGCTGGAAGTTCCCTTATTGACATGTATTCCAAGTGTGGGGCAATTGAAGATGCACATAAAGTTTATTCCAGCATGCCTGAGTGGAGTGTGGTCTCCATGAATGCTCTGATTGCAGGATATGCTGTAAAAGACACAAAAGAAGCTATTAATCTGCTTCATGAGATGCAGATATTGGGATTGAAGCCATCTGAAATCACATTTGCAACACTCATAGATGCTTGTAAGGGGCCTCCTAAGGTAATTTTAGGCATGCAGATTCATTGTGCTNTATTAAAGAGGGGTCTTTTATGTGGTAGTGAATTCTTAGGTACTTCTTTGTTGGGCATGTATATGGACTCGCAAAGGATTGCAGAAGGGAACATTCTTTTCTCAGAGTTATCTAACCTTAAAAGNGCGGTACTGTGGACGGCTTTAATTTCCGGACATACTCAAAATGAGTGCAGCGATGAGGCCATAAACTTGTATCGAAAAATGCGCGACAACAATATTTTACCTGACCAAGCAACNTTTGTTACTGTTCTGCGAGCTTGTGCACTCTTATCCTCATTGCAAGATGGTAAAGAGATACATTCTCTAGTTTTCCATACTGGTTTTGACTTAGATGAGTTAACCAGCAGTGCCCTTGTAGACATGTATGCTAAATGTGGGGATGTAAAAAGTGCTGCAAAAGTTTTTGAAGAATTGGCCATAAAAAGAGATGTGATTTCTTGGAACTCAATGATAGTTGGGTTCGCGAAAAATGGTTATGCAGAATGTGCGCTGAAGGTCTTCGATGAGATGACTCGATCATGCNTTACACCAGATGATGTCACATTCCTTGGAGTGCTCACTGCCTGTAGCCATGCAGGGTGGGTTTCTGAGGGTCGCCAAATTTTTGACACCATGGTAAGCTATTATGGCATTGAGCCCAGAGTAGATCATTATGCCTGTATGGTTGATCTTCTCGGTCGGTGGGGTTTTCTCAAAGAAGCTGAAGAGTTCATTGACAGGCTAGATGTTGAACCCAATGCTATGATTTGGGCCAATTTATTGGGTGCTTGCAGAATACATGGGGATGAGAAAAGGGGACAGAAGNCAGCTGAGAAACTTATCAAGTTAGAACCCCAAAATTCTTCTCCATATGTACTTCTTTCTAATATGTATGCTGCATCAGGACATTGGGATGAAGCTAGGTCTCTGAGAAGAACTATGATACAGAAAGAAATCCAAAAGATGCCTGGGTGTAGCTGGATTGTAGTGGGGCAAAAGACTAACTTATTCGTTGCAGGTGATATGTCACATCCTAGTTCTGATGAAATCTCACATGCTTTGAAGCATCTGACAGCCCTAATGAGAGACAATAGATTGGACGAAGATGGACTTTCCCAGGTTGTTCAAGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01091	12168	15035	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001091s00033712.1	PF01535.15	PPR	46	66	0.28
Glyur001091s00033712.1	PF01535.15	PPR	150	179	1.20E-09
Glyur001091s00033712.1	PF13812.1	PPR_3	186	209	0.6
Glyur001091s00033712.1	PF01535.15	PPR	220	250	3.90E-05
Glyur001091s00033712.1	PF13041.1	PPR_2	318	369	1.20E-08
Glyur001091s00033712.1	PF01535.15	PPR	397	420	0.073
Glyur001091s00033712.1	PF01535.15	PPR	425	454	0.0041
Glyur001091s00033712.1	PF01535.15	PPR	498	523	0.019
Glyur001091s00033712.1	PF13041.1	PPR_2	525	569	4.00E-09
Glyur001091s00033712.1	PF13041.1	PPR_2	627	673	6.80E-09
Glyur001091s00033712.1	PF01535.15	PPR	701	723	0.044
Glyur001091s00033712.1	PF13041.1	PPR_2	728	775	1.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.299
SRR1783600	control	1.344
SRR1783602	moderate drought stress	1.251
SRR1811619	moderate drought stress	1.297

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.050
DRR006520	Root Summer glycyrrhizin high producing strain	0.966
DRR006521	Root Winter glycyrrhizin high producing strain	1.167
DRR006522	Root Winter glycyrrhizin high producing strain	1.115
DRR006523	Root Summer glycyrrhizin low producing strain	2.376
DRR006524	Root Summer glycyrrhizin low producing strain	2.326
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.284
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.353

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.381
SRR2868004	Drought Stress (root)	0.969
SRR2967015	Control (root)	1.323

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.429
SRR9715740	Leaf	0.509
SRR9715741	Leaf	0.357
SRR9715739	Root	0.388
SRR9715742	Root	1.600
SRR9715743	Root	1.236

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.619
SRR8749028	MeJA induced 9h	1.723
SRR8749029	MeJA induced 9h	1.454
SRR8749030	Uninduced	0.287
SRR8749031	Uninduced	0.159
SRR8749032	Uninduced	0.311

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.386
SRR8400027	Control - Root	1.280