Gene detail information of Glyur001090s00029974 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44930.1 | 4.00E-52 | Plant protein of unknown function (DUF247) |
| NR | KEH17783.1 | 0 | DUF247 domain protein [Medicago truncatula] |
| Swissprot | tr|Q9SD53|Y3720_ARATH | 3.00E-33 | UPF0481 protein At3g47200 |
| trEMBL | tr|A0A072TLQ6|A0A072TLQ6_MEDTR | 0 | DUF247 domain protein {ECO:0000313|EMBL:KEH17783.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01090 | 69747 | 82346 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001090s00029974.1 | PF03140.10 | DUF247 | 31 | 185 | 2.20E-36 |
| Glyur001090s00029974.1 | PF03140.10 | DUF247 | 191 | 395 | 1.50E-51 |
| Glyur001090s00029974.1 | PF03140.10 | DUF247 | 454 | 905 | 6.30E-95 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.473 |
| SRR1783600 | control | 4.600 |
| SRR1783602 | moderate drought stress | 7.108 |
| SRR1811619 | moderate drought stress | 6.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.930 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.907 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.529 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.449 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.187 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.206 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.850 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.241 |
| SRR2868004 | Drought Stress (root) | 4.994 |
| SRR2967015 | Control (root) | 9.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.121 |
| SRR9715740 | Leaf | 19.389 |
| SRR9715741 | Leaf | 14.333 |
| SRR9715739 | Root | 1.429 |
| SRR9715742 | Root | 8.503 |
| SRR9715743 | Root | 6.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.835 |
| SRR8400027 | Control - Root | 14.350 |