Gene detail information of Glyur001090s00029973 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28580.1 | 6.00E-52 | Plant protein of unknown function (DUF247) |
| NR | KEH17778.1 | 0 | DUF247 domain protein [Medicago truncatula] |
| Swissprot | tr|Q9SD53|Y3720_ARATH | 1.00E-37 | UPF0481 protein At3g47200 |
| trEMBL | tr|A0A072TLP8|A0A072TLP8_MEDTR | 0 | DUF247 domain protein {ECO:0000313|EMBL:KEH17778.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01090 | 59500 | 61171 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001090s00029973.1 | PF03140.10 | DUF247 | 30 | 435 | 2.20E-95 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.566 |
| SRR1811619 | moderate drought stress | 0.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.470 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.527 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.080 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.080 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.206 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.883 |
| SRR2868004 | Drought Stress (root) | 0.613 |
| SRR2967015 | Control (root) | 0.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.774 |
| SRR9715740 | Leaf | 0.676 |
| SRR9715741 | Leaf | 1.550 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.340 |
| SRR9715743 | Root | 1.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.038 |
| SRR8749028 | MeJA induced 9h | 0.097 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.999 |
| SRR8400027 | Control - Root | 3.765 |