Gene detail information of Glyur001090s00029963 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44110.1 | 1.00E-147 | DNAJ homologue 3 |
| NR | XP_003529049.1 | 0 | PREDICTED: dnaJ protein homolog 2-like [Glycine max] |
| COG | YP_031786.1 | 3.00E-56 | molecular chaperone DnaJ [Bartonella quintana str. Toulouse] |
| Swissprot | tr|P42824|DNJH2_ALLPO | 0 | DnaJ protein homolog 2 (Precursor) |
| trEMBL | tr|I1KJN4|I1KJN4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G14540.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01090 | 10044 | 13514 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001090s00029963.1 | PF00226.26 | DnaJ | 14 | 71 | 3.40E-25 |
| Glyur001090s00029963.1 | PF00684.14 | DnaJ_CXXCXGXG | 148 | 214 | 1.70E-13 |
| Glyur001090s00029963.1 | PF01556.13 | CTDII | 271 | 345 | 1.40E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1542.679 |
| SRR1783600 | control | 1550.755 |
| SRR1783602 | moderate drought stress | 2058.338 |
| SRR1811619 | moderate drought stress | 2049.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3175.042 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3136.659 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 849.264 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 824.125 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3846.770 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3842.834 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 138.385 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 137.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 774.106 |
| SRR2868004 | Drought Stress (root) | 831.547 |
| SRR2967015 | Control (root) | 981.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 242.090 |
| SRR9715740 | Leaf | 301.430 |
| SRR9715741 | Leaf | 449.453 |
| SRR9715739 | Root | 1231.406 |
| SRR9715742 | Root | 2372.587 |
| SRR9715743 | Root | 2181.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 981.010 |
| SRR8749028 | MeJA induced 9h | 681.924 |
| SRR8749029 | MeJA induced 9h | 697.593 |
| SRR8749030 | Uninduced | 729.123 |
| SRR8749031 | Uninduced | 808.938 |
| SRR8749032 | Uninduced | 970.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1205.606 |
| SRR8400027 | Control - Root | 1358.102 |