Gene detail

Gene detail information of Glyur001089s00021518

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G03200.1	3.00E-137	Eukaryotic aspartyl protease family protein
NR	KEH35638.1	0	aspartic proteinase nepenthesin [Medicago truncatula]
Swissprot	tr\|Q766C3\|NEP1_NEPGR	1.00E-153	Aspartic proteinase nepenthesin-1 (Precursor)
trEMBL	tr\|A0A072V2P3\|A0A072V2P3_MEDTR	0	Aspartic proteinase nepenthesin {ECO:0000313\|EMBL:KEH35638.1}

Sequence

Transcript Sequence

>Glyur001089s00021518.1
ATGCTCATTATGGCCACATTGCAACAACATTGTTCTTCATCATCATGTGTCCCATTATTTGTGACACTACTAGTGGCAGGTCTTCTTGTTGATCCAACATCCTCAACATCCAGAGGATCATCCCTCCTACACCATCAACAACCTCACCACCACCACCAAGCCGGGTTCCGAGTCGCGCTTCGCCACATGGATTCGGNTAAGAATTTAACCAAACTGGAGCGTGTGCAACACGGCATCAAGCGTGGGAAAACAAGGCTGCAAAGACTGAATGCAATGGTTTTGGCAGCAACAACANCAACAGAAGATTCTTCTACCCAACAATTGGAAGCACCAATCCATGCAGGGAACGGTGAGTATCTAATGGAATTATCCATTGGAACCCCACCAGAATCTTACCCTGCAGTCTTAGACACTGGAAGTGACCTCATATGGACACAGTGCAAGCCTTGTTCACAATGTTACAAACAACCCACACCCATTTTCGATCCCAAAAAGTCCTCAACTTTTTCAAAGCTCTCATGTAGTAGCAACCTCTGCAGNGCACTACCTTCCTCCACTTGTAGCAGTGATGGTTGCAATTATGTGTACTCATACGGTGACTATTCAATGACACAAGGGGTTTTAGCCACAGAAACCTTCACTTTTGGTGACGACAAAGTTTCAATCAAGAACATTGGTTTTGGTTGTGGAGAGGACAATGAAGGAGATGGTTTTGAACAAGCTTCGGGTTTAGTTGGTCTCGGTCGNGGTCCTTTGTCTTTGGTTTCTCAGCTTAAGGAACCAAAATTCTCGTACTGTTTGACACCAATGGGTGATTCAAAAACGAGTCTTTTGTTGTTGGGTTCACTTGCAAACACAAAAGAAGATTCAAATTCACTCACTGTTACAACCCCTCTTCTTACAAACCCATCTCAACCGTCTTTTTATTATCTTTCTCTTGAAGGAATCTCTGTGGGNGATACTCGATTGTCCATTGAAAAATCCACTTTTGAGGTAAGTGATGATGGGAGTGGTGGTGTGATCATTGATTCTGGCACAACAATTACTTACATTGAGGAGAATGCTTTTGATGCTTTAAAGAAGGAGNTCATTTCTCAAACGAAACTTCCATTGGATAAGTCAGGAACAACTGGGTTAGATGTTTGTTTTACATTGCCATCAGGGGATACAACACAAGTGGAGATTCCTAAGCTTGTTTTCCATTTCAAAGGTGGGGATTTGGAGTTGCCTGCTGAGAACTACATGATTGCTGATTCGGGTTTAGGAGTGGCTTGTTTGGCTATGGGTGCTTCTAATGGGATGTCCATAATTGGGAATGTTCAACAGCAGAACATTCTGGTGAACCATGATCTTCAGAAGGNTACTATTTCTTTTGTTCCTACACAGTGTGATCAGTTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01089	84654	86054	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001089s00021518.1	PF14543.1	TAXi_N	119	281	1.00E-42
Glyur001089s00021518.1	PF14541.1	TAXi_C	308	459	2.10E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.846
SRR1783600	control	21.913
SRR1783602	moderate drought stress	17.980
SRR1811619	moderate drought stress	18.988

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.925
DRR006520	Root Summer glycyrrhizin high producing strain	31.546
DRR006521	Root Winter glycyrrhizin high producing strain	0.080
DRR006522	Root Winter glycyrrhizin high producing strain	0.078
DRR006523	Root Summer glycyrrhizin low producing strain	15.286
DRR006524	Root Summer glycyrrhizin low producing strain	15.516
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.015

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	79.940
SRR2868004	Drought Stress (root)	55.120
SRR2967015	Control (root)	52.599

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.139
SRR9715740	Leaf	4.043
SRR9715741	Leaf	1.294
SRR9715739	Root	25.261
SRR9715742	Root	43.953
SRR9715743	Root	42.077

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.847
SRR8749031	Uninduced	0.822
SRR8749032	Uninduced	0.242

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	86.070
SRR8400027	Control - Root	125.526