Gene detail

Gene detail information of Glyur001089s00021513

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38730.1	2.00E-120	Protein of unknown function (DUF803)
NR	XP_004503005.1	0	PREDICTED: magnesium transporter NIPA3-like [Cicer arietinum]
Swissprot	tr\|Q8GYS1\|NIPA7_ARATH	3.00E-149	Probable magnesium transporter NIPA7
trEMBL	tr\|I1KBR6\|I1KBR6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G16670.1}

Sequence

Transcript Sequence

>Glyur001089s00021513.1
CTGACAATCTGTCTCTCCACTCACTCATTGACGTCGTACATACATGGGACCCAAACCAAACACTCCCCAATTCCAATCCAAGTCATTATTCGACCCCACCACCAAACAGTAGTAAACTAAAACACAAAGAGGGAAGGCGCGACCCGGCCAGATTTTAATTAATTGGTGCCAAACCAAAAGAGAAGAGAAGAGAAGAGAGCACACCACACTGCGAATGAGTTTGAGAAAGTTCTCTGTTGTTGTTGTTGTTGTTGATGATCCAAATTCTAATCTAGGGTTCCAAATCACTCACTCGCCTCAGTTGTTGTTGTTGTTGTTACCAGTTTCCCTCGTCTGGCGAATACAAACATCCACAGAGATAATTAGATAGAATAGATACACATGTACTCGAGCAATTTGACTGGGTTTCTGTTGGCCGTTGTCTCCGGCGCTTTCATCGGTTCCAGCTTCATCATCAAGAAAAAGGGTCTCCAACGTGCCAGCCTCAACGGCTCACGTGCCAGTGTAGGAGGCTATGGTTATCTGCTGCAACCTCTTTGGTGGCTCGGAATGGTTACCATGATTGTTGGAGAGATATCGAATTTTGTGGCATACATTTATGCCCCTGCGGTGCTTGTCACGCCACTTGGTGCTTTGAGCATCATTGTTAGTGCTGTATTGGCTCATTTCATGTTGGGGGAGAAGCTGCAGAAAATGGGCATGCTCGGGTGTCTTTTGTGCATTGTTGGATCCACCATGATCGTGCTCCATGCACCCCAAGAAAAGTCTCTTAGTTCTGTGCTCGAAATATGGCAATTGGCTATTCAACCAGCATTCCTCTTGTACACGGCCTCAGCAATGGCTGTCGCATTCTTTCTGATTTTGTATTGTGCTCCTCGCTATGGCCAAACTAATATCTTTGTTTATGTCGGAATCTGCTCCATAATTGGATCTTTGACTGTTATGAGCATTAAAGCAATCGGCATTGCTATAAAACTTACATTTGGGGGTNCNAACCAGTTNGTCTACTTTCAGACATGGATTTTTACAATGGTCGCNGTTTCCTGCATCATTACTCAATTAAATTACCTCAACATGGCATTAGATACTTTCAACACAGCAGTTGTTTCTCCTATCTATTATGCCTTGTTCACATCGTTTACAATATTAGCCAGCGCAATCATGTTCAAGGACTATTCTGGTCAAAGTATAAGCAGTATTGCATCAGAGTTTTGTGGTTTCATCACTGTTTTATCTGGAACAACTGTATTGCACAGTACAAGAGAGCCAGATCCTCCAGTCAGTACAGTTATGTTTGAGAGGCTAATGCTGTTTCCAAAAGTGCTTATTTTACCCTCCCTTCTGAACAAACTGGGAGAAATGCNTAATTATTCATCACTTGCAGATTTGTACAGTCCCTTGTCTCCAAAAGTATCATGGTATATCCAAGGCAATGGTGAACCTTGGAAACAGAAGGAGGAAGATGGATCACCCTTTAATTTAATCACAGTAATCCGGCAAGACCATTTCAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01089	70701	74562	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015693 magnesium ion transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015095 magnesium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001089s00021513.1	PF05653.9	Mg_trans_NIPA	3	295	8.50E-127

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.880
SRR1783600	control	1.871
SRR1783602	moderate drought stress	2.514
SRR1811619	moderate drought stress	2.617

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.393
DRR006520	Root Summer glycyrrhizin high producing strain	2.593
DRR006521	Root Winter glycyrrhizin high producing strain	4.879
DRR006522	Root Winter glycyrrhizin high producing strain	5.176
DRR006523	Root Summer glycyrrhizin low producing strain	1.908
DRR006524	Root Summer glycyrrhizin low producing strain	2.084
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.490
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.309

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.171
SRR2868004	Drought Stress (root)	5.570
SRR2967015	Control (root)	5.926

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.122
SRR9715740	Leaf	2.361
SRR9715741	Leaf	3.263
SRR9715739	Root	1.215
SRR9715742	Root	1.830
SRR9715743	Root	2.277

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.013
SRR8749028	MeJA induced 9h	9.417
SRR8749029	MeJA induced 9h	4.005
SRR8749030	Uninduced	4.886
SRR8749031	Uninduced	2.527
SRR8749032	Uninduced	1.247

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.949
SRR8400027	Control - Root	5.113