Gene detail

Gene detail information of Glyur001089s00021508

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24290.2	2.00E-113	MAC/Perforin domain-containing protein
NR	XP_003630393.1	0	MAC/Perforin domain containing protein [Medicago truncatula]
Swissprot	tr\|Q9STW5\|MACP2_ARATH	2.00E-134	MACPF domain-containing protein At4g24290
trEMBL	tr\|G7LFS5\|G7LFS5_MEDTR	0	MACPF domain protein {ECO:0000313\|EMBL:AET04869.1}

Sequence

Transcript Sequence

>Glyur001089s00021508.1
GAACTTCTGTCCTGCGGAATTAAGAAATGGCTTCAAGGGATTCACGTTTACAAGCAGCCCAGCAAGCCGTTGATTCAATCGGTTTGGGCTTTGACTTCACTCAAGATATATGTTTTGGCAACTGCAAGAGGGGTTCACCTTTGATCCCACTCGATGAAGAACAGTGTCATCGTCCTCTGGTGCTTCCTGGAGGTGTTTCAATTCCAAATGTTCCAAACTCTATCACATGTGTCACTGGGGAATCACTTAGAATCCATTCCGAGGTTCTCTCCTTGCAAATGATGTTGGAGCATTTCAACCAGGAAATGTGTTTGGAAGGGAAAACTGTATCTGGTCATTTTTGTGCTTCATTTGGGTTGTCTGGTCGCTGCATAAAAGATTTTGCTTCCATTAAGTCTCTTGCTTATGATGGGTGGTTCATCAAACGCTATGCTATTGAATTAGACAAGCATCATGGAGAACTCCATGACCATGTCAAAGCAGCAGTGCCATCATCATGGGACCCTGAGGCTCTGGCAAGGTTTATAGAGCGTTTTGGAACTCATGTTGTTATTGGGAANATTGTCACGATACACAACAGGCGGGGCGGAAGCAGTGGAAAGACTCATCATAAGGAATGGCTAGATACTATAGACTTGGAACCTGATGTCATATCAATGTTTCTGCTCCCCTTGTCATCCCTCCTGAAGAGTATCCAAGGCAGTGGATTTGTGAACCATGCCATAAATCTCTACCTGCGTTATCTACGTCAGTTTTTTGAGTTTCAGCTTCCAAGAGAATGGNCCCCGGTATACAGTCACATACCTCTCAGTTCTCATTCGAAGCACCAAGTCAACACCTCGCTAAGATTTGGTATCTTGGGTCCCAAGCTTTATATAAACACAATTCCAGTAGATGTAGGTAATATACCAGTAACTGGCCTCAGATTACAATTGGAAGGGAGAAGAAACAACCGTTTGGCCATTCACTTGCAGCATCTCACTTCACTACCCAACTCATTCCCACTTTCACACAACACTAATGCCTATTTGTCTTGTGATCCTTATAACTGCAACTTCCATAAAAGGGTCAAGTGGAACTGCTTGTCATATGTTTGTACTTCTCCAGTTGAATCAGATGACACTCTTTCCATTGTTACTGGAGCTCAGTTACAAGTTGAAAACAAGTGTCTACTTTTACGGCTGCGATTCTCCAAAGTCATTGGTGCTACCCTGAAGAAGCCACCTGAGTGGGATCAATCTTCCAATCTTGTCCAGTTCAGCTTCAAGTATGGGAGCATGTCACCATTTTTTTTCCAAGAGGGACAAAAGGGTCATCCAATGCCAGGTGATGAGACAATGCTCACTACTCAATATTCTTTTGCCTTACCTACACCAGTGCACAAACCTAAGCTTCTAGGATATGTTGACACAAGAGAGATTATAAGAGGACCAGAAAATACTCCCGGATATTGGGTTGTCTCTGGAGCCAGGCTTTCTGTCCAGAATGGAAAAATATCTCTGAGTGTTAAGTACTCACTCTTGAGCNTTGCTCTGTAAAAGTGAAACTGAAGCCTTGTAGCAGTGTTTTGAGGCTCCGTTCAAATGCTGTGACAAATGCTATTAGACATGCCGATTTTATTGATGTTTCTTGAGATTTTTTATATTTAACTGTTGGGTTTGATTATTTTCCTCAATCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01089	54698	58682	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001089s00021508.1	PF01823.14	MACPF	117	175	1.00E-05
Glyur001089s00021508.1	PF01823.14	MACPF	186	236	1.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.407
SRR1783600	control	3.332
SRR1783602	moderate drought stress	2.843
SRR1811619	moderate drought stress	2.789

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.044
DRR006520	Root Summer glycyrrhizin high producing strain	4.467
DRR006521	Root Winter glycyrrhizin high producing strain	3.472
DRR006522	Root Winter glycyrrhizin high producing strain	3.695
DRR006523	Root Summer glycyrrhizin low producing strain	8.822
DRR006524	Root Summer glycyrrhizin low producing strain	8.842
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.916
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.762

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.121
SRR2868004	Drought Stress (root)	10.628
SRR2967015	Control (root)	11.181

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.542
SRR9715740	Leaf	13.078
SRR9715741	Leaf	27.830
SRR9715739	Root	1.732
SRR9715742	Root	4.539
SRR9715743	Root	3.096

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.053
SRR8749028	MeJA induced 9h	19.080
SRR8749029	MeJA induced 9h	9.207
SRR8749030	Uninduced	35.432
SRR8749031	Uninduced	16.541
SRR8749032	Uninduced	10.034

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.708
SRR8400027	Control - Root	8.028