Gene detail

Gene detail information of Glyur001089s00021507

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G08650.1	Small GTP-binding protein
NR	XP_004503008.1	PREDICTED: translation factor GUF1 homolog, chloroplastic-like [Cicer arietinum]
COG	YP_001658998.1	GTP-binding protein LepA [Microcystis aeruginosa NIES-843]
Swissprot	tr\|A5B4D2\|GUFP_VITVI	Translation factor GUF1 homolog, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03138} (Precursor)
trEMBL	tr\|I1KBR9\|I1KBR9_SOYBN	Translation factor GUF1 homolog, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_03138}

Sequence

Transcript Sequence

>Glyur001089s00021507.1
CAAAAATGAGTCGAAGGCTAGTATAACGTGTTCCGTCTGCACCGTGGTCTAAACTCTAAAGAGTAGTAAAGTCACAACTTCAATGGCCGCAGAAATTTGTGGCGGGTCTCTACTCTTATCCGTTAAAACTCAACAACTGCTGCAACTGCAACAACACCTATTCCTCCATTCTCAACGAACAACAACAACCGCTACCAGATTCCACTCACACTCCAAACCTTCCTTTTCCTTTCGCTCTCCAATTCCAAATGCCTCCACCTTCCGCCGTTGCCGCCGCGGCTCCTCTGTCTTCTGCCAGGTTGCTAGCAGCACCGACTTAGAATCCGCCGCCAAAGCCGGCCAAAATCGTCTCTCTAAGGTGCCGGTGTCTAATATAAGGAACTTCAGCATCATTGCACATATTGACCATGGGAAATCCACCTTGGCCGATAAGTTGCTTCAGGTCACTGGCACCGTTCCCCAGCGAGAGATGAAGGATCAGTTTCTCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGGCAGCTCGAATGCGTTATGTGTTTGAAAATAAACCATATTGCTTAAATTTAATTGACACTCCAGGGCACGTCGACTTCTCGTACGAGGTTTCTCGATCACTTGCTGCATGTGAGGGTGCTCTCCTTGTTGTAGATGCTTCTCAGGGGGTTGAAGCACAAACACTAGCTAATGTTTATTTGGCTCTAGAGAACAACCTAGAAATTATCCCTGTTTTGAATAAAATAGATCTTCCAGGTGCAGAACCAGATCGAGTTATCAAGGAGATTGAAGAGGTTATAGGCCTAGATTGTAGCAACGCGATTCTCTGCTCTGCAAAGGAAGGAGTAGGTATAATTGAAATTCTCAATGCAATTGTTGCAAGAATTCCCCCACCTGCTGATACATCCGAAAGGCCATTGAGGGCTTTAATATTTGATAGTTACTATGATCCATATAGAGGTGTTATTGTATATTTTCGAGTTGTAGATGGNGCTATAAAGAAAGGTGACAGAGTTTGTTTTATGGCTAGTGGTAAGGATTATTTTGCTGATGAAATTGGAGTTTTGTCTCCCAATCAACTTCAAGTGGGCTATTTATCTGCATCAATAAGAACAGTAGCTGATGCCAGAGTGGGTGACACCATTACTCACTATGCCAGAAAGGCAGATAATTCACTCCCTGGATATGAAGAAGCCACTCCTATGGTGTTCTGTGGCCTGTTTCCCGTTGATGCTGACCAATTTCCTGAGCTACGAGATGCACTTGAGAAGCTTCAACTCAATGATGCTGCACTGAAGTTTGAACCTGAGACCTCAAGTGCTATGGGATTTGGCTTTAGATGTGGGTTTCTGGGNCTTCTACACATGGAAATTGTTCAGGAGAGACTTGAGAGGGAATACAATTTGAGCCTGATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTGTAAATGGTGATACTGTCGAATGCTCAAATCCATCTGTACTTCCTGAGCCTGGAAAAAGGAAATCAATNGAGGAGCCATTTGTTAAGATGGTTGGTGATTTCTTCGACCAGTTAAAGTCAAGAAGTAAGGGTTACGCTAGTATGGAGTATACCTTTGTCGGGTACAAAGAAAGTGATTTAATTAAACTCGACATACTGATAAATGGTGATTGTGTGGAGCCATTGGCTACAATTGTGCACAAAGATAAGGCATATTCTGTGGGAAGGGCTTTGACTCTAAAGTTGAAGGAGCTCATACCGCGGCAAATGTTTAAAATACCAATTCAAGCATGCATGGGAGCTAAAGTGATTGCTAGTGAATCTTTATCTGCAATAAGGAAGGATGTATTAGCCAAATGCTACGGTGGGGACATTACGAGAAAAAAGAAATTGCTTAGGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCTATTGGTAAAGTGGATGTGCCTCAAGAAGCTTTTATGGCGGTTTTGAAACTNGAAAAGGAAGTATTATGATAATGTTTTCCTGTAAGTTCAACNTCATCTGAAATTGTAAATATATTGGGAAAGTGTTTTGGTATTATGATTCAAATGTTGTCATTGACTCTTCGCTGCATAGTGCAAACAACTTTTTGATTATTGATAGGATCTCTTTGACCTTGAAATATTTGGTCAATATTCTAGTCTTTATTGCCAAGATTCGANAGCTATGTCAGTGCAACAATGTTACTCTCTCTTTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01089	44802	54122	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001089s00021507.1	PF00009.22	GTP_EFTU	97	274	1.60E-52
Glyur001089s00021507.1	PF06421.7	LepA_C	528	634	9.50E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.985
SRR1783600	control	2.780
SRR1783602	moderate drought stress	3.715
SRR1811619	moderate drought stress	3.638

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.584
DRR006520	Root Summer glycyrrhizin high producing strain	3.545
DRR006521	Root Winter glycyrrhizin high producing strain	6.620
DRR006522	Root Winter glycyrrhizin high producing strain	6.834
DRR006523	Root Summer glycyrrhizin low producing strain	3.605
DRR006524	Root Summer glycyrrhizin low producing strain	4.059
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.642
DRR006526	Leaf Summer glycyrrhizin high producing strain	53.912

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.656
SRR2868004	Drought Stress (root)	12.057
SRR2967015	Control (root)	12.037

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.425
SRR9715740	Leaf	49.781
SRR9715741	Leaf	35.333
SRR9715739	Root	1.730
SRR9715742	Root	3.229
SRR9715743	Root	3.782

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.277
SRR8749028	MeJA induced 9h	11.469
SRR8749029	MeJA induced 9h	6.441
SRR8749030	Uninduced	10.134
SRR8749031	Uninduced	4.363
SRR8749032	Uninduced	5.153

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.048
SRR8400027	Control - Root	14.974