Gene detail

Gene detail information of Glyur001089s00021500.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03795.1	4.00E-136	Exostosin family protein
NR	XP_004503012.1	0	PREDICTED: probable glycosyltransferase At5g03795-like [Cicer arietinum]
Swissprot	tr\|Q9FFN2\|GLYT3_ARATH	5.00E-165	Probable glycosyltransferase At5g03795
trEMBL	tr\|A0A072VBU5\|A0A072VBU5_MEDTR	0	Exostosin family protein {ECO:0000313\|EMBL:KEH35655.1}

Sequence

Transcript Sequence

>Glyur001089s00021500.1
ATGATGATGATGATGATGAACAGAGCTTCCTCTCATAACANCAAGTGTTTCTCTTCGTCCACTTGTTCTTCTTCTCAGTTTGCGGCTCTCTTCTTCACACTAGTTCTTGTAGTTTCTTGTTGGAGTCTGTCTCCAAATTCCTCTTCATCGTTTCTTGTTTCTTGGAGTATAAAAAGAGCTTCAACAGTACTATATGATGGTGATGTGGGAGAGGCTCCAGCTCNATCACCAACTGCATTTCCATCAGAAGCTTTTGTTCCATATGGTTCTCCTCGTGTAATCAATAATGAGGCCTCTCCTTCTTCTTATCACCATGATGGTGAAAAGCTTGACACAAACTTAAAGCANAAAGGTACTACAAACAAAGCGAACCTTAGAGCTCATAAATACAGCCAATTGAAAAGAATAGAAGCAAGATTGGACAAAGCACGGTATTACATCAGAGAAGCTAGCAAAGTTCGAAATTTGACATCAACCCACCAAGACCCTGACTATGTTCCTCNTGGCCCAATTTACAGAAACGCCAATGCTTTTCATAGGAGTTACCTAGAGATGGAAAAGGTGTTCAAGATTTTTGTGTATGAGGAAGGGGAGCCACCTCTGTTTCACAATGGTCTATGCAAAAATATATACTCAACAGAGGGAAGTTTCATAAATGAAATGGAAAAGGGGAGGTACTATCGCACTAATGATCCAAACGAGGCTTTTGTGTATTTTCTTCCTTTCAGTGTGGTGATGATGGTCGAATATCTGTACGNGGATGGCTCCAGTGATCGATCTTCCATTGGCCTTTCTGTGAAAGACTATGTACAGATTATATCCCATAAACACCCCTTCTGGAATCGNTCCTTGGGCTATGATCACTTCATGCTCTCTTGCCACGATTGGGGTCCGCTTGCATCTTCTTACGTGGATGAATTGTTCCACAATTCCATAAGGGTTCTTTGCAACGCAAATACATCAGAAGGATTCAAGCCATCAAAGGATGTCTCATTCCCTGAAATCAATCTCGAGACAGGGGAAATCAAGGGTCTAGTAGGAGGAGGGTACCCCCCATTTCGTAGGACCACCCTTGCTTTCTTTGCAGGTCACCTGCATGGCCACATAAGGTACCTTCTCCTCAAGGAGTGGAAAAACAAAGACCAAGATGTCCAAGTCTATGATGAACTCCCTCAGGAACTTTCCTACTACACAAAGCTAAGGAGCAGCAAGTTTTGCTTGTGTCCAAGTGGTTATGAAGTGGCAAGCCCCAGAATAGTGGAAGCTATATTTGCAGAATGTGTGCCTGTGTTGATTTCTGATGGCTATGTTCCACCTTTTAGTGATGTTTTGAATTGGAAATCGTTTTCAGTTCAGGTAGATGTGAAGGAGATTCCTAATATCAAGAAGATACTCATGGGGATTTCACAAAGGAAGTACTTGAGGATGCAGAAGAGAGTGAAACAAGTGCAGAGGCATTTTGTGCCTAATGAGCCACCNAAGAGGTTTGATGTGTTCCACATGACTATCCATTCCATTTGGCTCAGGAGGTTGAATATCCGTATTGAAGATCAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01089	5575	8004	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001089s00021500.1	PF03016.10	Exostosin	186	467	6.00E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.235
SRR1783600	control	0.235
SRR1783602	moderate drought stress	0.195
SRR1811619	moderate drought stress	0.167

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.208
DRR006520	Root Summer glycyrrhizin high producing strain	0.206
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.141
DRR006524	Root Summer glycyrrhizin low producing strain	0.141
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.238
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.238

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.528
SRR2868004	Drought Stress (root)	0.570
SRR2967015	Control (root)	0.464

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.557
SRR9715740	Leaf	0.171
SRR9715741	Leaf	0.000
SRR9715739	Root	0.159
SRR9715742	Root	0.320
SRR9715743	Root	0.194

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.121
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.128
SRR8749031	Uninduced	0.654
SRR8749032	Uninduced	0.479

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.216
SRR8400027	Control - Root	0.223