Gene detail information of Glyur001088s00027877 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14670.1 | 0 | Endomembrane protein 70 protein family |
| NR | AES99151.2 | 0 | transmembrane 9 family protein [Medicago truncatula] |
| Swissprot | tr|Q9ZPS7|TMN3_ARATH | 0 | Transmembrane 9 superfamily member 3 {ECO:0000305} (Precursor) |
| trEMBL | tr|G7KFW4|G7KFW4_MEDTR | 0 | Transmembrane 9 family protein {ECO:0000313|EMBL:AES99151.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01088 | 66294 | 70762 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001088s00027877.1 | PF02990.11 | EMP70 | 55 | 220 | 3.30E-36 |
| Glyur001088s00027877.1 | PF02990.11 | EMP70 | 218 | 508 | 2.10E-114 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.984 |
| SRR1783600 | control | 1.043 |
| SRR1783602 | moderate drought stress | 0.428 |
| SRR1811619 | moderate drought stress | 0.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.345 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.379 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.851 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.762 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.517 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.365 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.638 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.066 |
| SRR2868004 | Drought Stress (root) | 11.553 |
| SRR2967015 | Control (root) | 10.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.739 |
| SRR9715740 | Leaf | 0.579 |
| SRR9715741 | Leaf | 1.116 |
| SRR9715739 | Root | 0.888 |
| SRR9715742 | Root | 1.021 |
| SRR9715743 | Root | 1.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.003 |
| SRR8749028 | MeJA induced 9h | 21.481 |
| SRR8749029 | MeJA induced 9h | 6.023 |
| SRR8749030 | Uninduced | 47.448 |
| SRR8749031 | Uninduced | 25.599 |
| SRR8749032 | Uninduced | 15.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.993 |
| SRR8400027 | Control - Root | 2.865 |