Gene detail

Gene detail information of Glyur001088s00027874

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03270.2	1.00E-62	Adenine nucleotide alpha hydrolases-like superfamily protein
NR	XP_003616191.1	1.12E-103	Universal stress protein A-like protein [Medicago truncatula]
COG	YP_520686.1	1.00E-14	hypothetical protein DSY4453 [Desulfitobacterium hafniense Y51]
Swissprot	tr\|Q8LGG8\|USPAL_ARATH	3.00E-14	Universal stress protein A-like protein
trEMBL	tr\|G7KFW2\|G7KFW2_MEDTR	4.00E-104	Uncharacterized protein {ECO:0000313\|EMBL:AFK40246.1}

Sequence

Transcript Sequence

>Glyur001088s00027874.1
AGCAGAGTTCATTGTCTTTGTTCCATTCAACTTTATGCCATATTCCACACTAGCTTTGTCACAAATCATAATTTCCTAATTCACACCATCCATCTGATTATTCCTTTCCCTCTTTAATTTTCTGGAACATTCTTCTCTTGTACTACACATCTCAAAAACCAGCAACACCAGCCGCCAAACAACTAATTCCCCTTGAAACCAAACACCAACTATAAAAAGAGGGGAACTCACCCTTCAATTTCTTGATATAGGAGCATCAATATCAGTTTCAATTATTAAGATGGCAAAGGCACACATAGTTGGAGTAGCCATGGATTTCTCTCCCACTAGCAAATTAGCACTTAGATGGGCCGTTGATAATCTCATCAACAAAGGTGATCAAATCATCATGATCAATGTTCAGCCTCACACTGCTGATCACACCAGAAAGGAGCTTTTTGAAAACACTGGTTCACCTTTGGTGCCTCTGGAGGAATTGAGGGAGATAAACTTTACAAAGCAATATGGGATTGCCAGGGATCCTGAGGTCTTAGATATTCTTAACACTGCCTCCAAGACCAAAGGGGCAAAGGCAGTGGCAAAGGTGTACTGGGGTGATCCAAGGGAGAAGTTGTGCAGTGCTGTGGAAGATCTTCATCTTGACTCTTTGGTTGTTGGAAGCAGGGGTTTAGGTCCCATTAAAAGGGTGTTGTTAGGCAGTGTAAGCAGGCATGTGGTGACAAATGCTTCTTGCCCTGTTACAGTGGTTAAGGGAAAGCAACCTAGCAAGTAAAGCCCCAGTAATTGATCCGGTTGTGAATAATTTACTTTTGTGTTTATACATATGAAGAAATTCTGGAANTGTGTGATTGATAGATGCACGTGGACAGGGAAATGAATCACAGAATCACAGCTTTGATGAAAGAGAAGTACTGTACTACTGTACCCTTGAAAATGATTTGGCTTTAATAATAGTTTTTTGGTTGTTTTGTATGTATAAATAAATTTAGTATATTAGAAACCATCACCACTTCATATAGTGATACTGATAGGTAGCTGTGTGTCATATTTGGATAAGAGGCTTGGTTACTATTAAATAAATTGTGTGATTGGATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01088	56736	58382	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006950 response to stress

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001088s00027874.1	PF00582.21	Usp	6	157	8.50E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.869
SRR1783600	control	2.780
SRR1783602	moderate drought stress	1.892
SRR1811619	moderate drought stress	1.892

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.040
DRR006520	Root Summer glycyrrhizin high producing strain	15.968
DRR006521	Root Winter glycyrrhizin high producing strain	200.554
DRR006522	Root Winter glycyrrhizin high producing strain	196.263
DRR006523	Root Summer glycyrrhizin low producing strain	94.804
DRR006524	Root Summer glycyrrhizin low producing strain	93.779
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.122
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.824

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.515
SRR2868004	Drought Stress (root)	86.823
SRR2967015	Control (root)	111.124

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.465
SRR9715740	Leaf	3.524
SRR9715741	Leaf	5.066
SRR9715739	Root	2.168
SRR9715742	Root	12.978
SRR9715743	Root	10.824

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.966
SRR8749028	MeJA induced 9h	159.590
SRR8749029	MeJA induced 9h	74.438
SRR8749030	Uninduced	218.595
SRR8749031	Uninduced	549.288
SRR8749032	Uninduced	444.771

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.158
SRR8400027	Control - Root	26.888