Gene detail

Gene detail information of Glyur001088s00027873

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53380.1	0	Concanavalin A-like lectin protein kinase family protein
NR	XP_003616189.1	0	Lectin receptor kinase-like protein [Medicago truncatula]
COG	YP_004571825.1	2.00E-23	serine/threonine protein kinase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q9LFH9\|LRK81_ARATH	0	L-type lectin-domain containing receptor kinase VIII.1 (Precursor)
trEMBL	tr\|G7KFW0\|G7KFW0_MEDTR	0	L-type lectin-domain receptor kinase {ECO:0000313\|EMBL:AES99147.1}

Sequence

Transcript Sequence

>Glyur001088s00027873.1
ATGTCGCTACTTTCTTTCTTCTCATTCTTCTTCTGGGGTCTCTGTTTTTTCAACGGTGTAATCGCATCCACGGAATTCGACTTCGGAACCTTAACATTAAGCAGCCTCAAGCTTCTCGGCGATGCCCATTTGAACAACGGAACCGTGAGTCTCACGCGCGACCTCGCCGTTCCAAACTCCGGCGCCGGCCAGGCCCTGTATTCACGTCCGGTAAGGTTCCGGCAACCGGGAACCCTAACTCCGGCGAGCTTCACCACCTTCTTCTCCTTCTCCGTGAAAAATCTGAACCCTTCCTCCATCGGCGGTGGCCTAGCCTTCGTAATCTCACCGGACGAGGACACACTCGGCGACGCCGGCGGGTTCCTCGGCCTGGCCGGCGATGGGTACGTCGCCGTCGAGTTNGATACCCTTATGGACGTTGAGTTCAAAGACATTAACGGTAACCACGTTGGTGTTGACCTCAACAGTGTTGTCTCAACCGAAGTTAGTGACTTGGGTTCTATTGGGATCGATCTCAAGAGTGGTGACACGGTTAATGCGTGGATCGAATTCGATGGATCCAACAAGGGGTTGAATATTTGGGTCTCTTACTCCAATCTCAANCCAAAAGATCCAATTTTGACCATGAATCTGGACATGGGTCAGTACCTTAACGATTTCATGTATGTGGGGTTCTCTGGTTCAACACAAGGTAGCACAGAGATTCACCGTTTGGAGTGGTGGAGCTTCAGCTCCTCTTTCGGGTCGGGTTCTTCGCCGGCGGCAACTCCNCCACCGCCGGCGGTTAATATGATGAATAATACTGCCAATGCCAACCCAGTGAGGTCTTCTTCACCACCTCCTTCTTTGGCTCCTTCTGTGAATTCATCTAATGAAGAAAGGAAAGAGAGTAATAAGTCTTCTTGTCACAATGGGTTGTGTAAGCAAGGTTTAGGTGCTGTTGCTGGGGTTGTTACTGCTGGGGCTTTTGTTTTGGCACTGTTTGCAGGGTCGTTGTTTTGGGTTTACTCTAAGAAGGTGAAGCGCGTGAACAACAACAGGTTTGATTCTCTTGGATCGGAGATCATCAAGATGCCTAAGCAGTTTAGCTACAAGGAGCTCAAGTCAGCTACAAAGTGCTTCAATTCGAATAGGATCATCGGTCACGGCGCGTTTGGGACCGTGTATAAAGGGGTTTTGCCTGAGAATGGTGACATTGTTGCTGTGAAGAGGTGCAGCCATAGTAGTCAGGGTAAGAATGAGTTTCTGTCTGAGTTGTCTATAATTGGTAGCCTTAGGCATCGGAATTTGGTTCGGCTTCAAGGGTGGTGCCATGAGAAAGGGGAGATTTTGTTGGTGTATGATTTGATGCCTAATGGGAGTTTGGATAAGGCTTTGTTCGAGGCGAGAACGCCGCTTCCTTGGCCTCACCGGCGAAAGATTTTGCTCGGTGTGGCGTCTGCATTGGCTTACTTGCATCAAGAGTGTGAGAATCAGGTAATTCATAGGGATATTAAGACTAGTAACATAATGTTGGATGAAGGGTTCAATGCCCGGTTGGGTGATTTCGGGTTGGCGAGGCAAACCGAGCATGACAAGTCCCCGGATGCCACGGTGGCTGCGGGGACAATGGGGTACCTGGCACCTGAGTATCTCCTTACAGGTAAAGCTACCGAGAAAACCGATGTGTTCAGTTTTGGTGCAGTGGTTCTTGAGGTGGCCAGTGGGAGGAGACCTATAGAGAAAGATGCTACTGGGGTTGGTAAAGTTGGGGTGAGCAGCAATTTGGTGGAGTGGGTTTGGAGTTTGCACAGGGAAGGGAGGTTGCTAATGGCGGCTGATCCGAGGCTTGGGGATGAGTTTGATGAGGTGGAGATGAGAAGGGTGCTCTTGGTTGGGCTGGCTTGCTCACAACCTGATCCATTGACTAGACCAACTATGAGAGGTGTGGTTCAGATGCTTGTGGGTGAGGCTGAAGTTCCGATTGTCCCAAGAACGAAGCCGTTTACAGGTCTCAGTACTTCGCACTCGCACCTCTTACTGAGCTTGCAAGATAGTGTATCTGACTGTGATGGTATAATCACCATCTCTACCTCCTCATCGGATAACAGCTTCAACGGCGGAGATATAGTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01088	43666	45780	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.3.7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001088s00027873.1	PF00139.14	Lectin_legB	24	244	2.10E-58
Glyur001088s00027873.1	PF00069.20	Pkinase	375	576	3.00E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.227
SRR1783600	control	3.879
SRR1783602	moderate drought stress	2.339
SRR1811619	moderate drought stress	2.296

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.943
DRR006520	Root Summer glycyrrhizin high producing strain	3.875
DRR006521	Root Winter glycyrrhizin high producing strain	0.243
DRR006522	Root Winter glycyrrhizin high producing strain	0.195
DRR006523	Root Summer glycyrrhizin low producing strain	1.741
DRR006524	Root Summer glycyrrhizin low producing strain	1.622
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.333
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.132

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.144
SRR2868004	Drought Stress (root)	8.697
SRR2967015	Control (root)	8.603

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.727
SRR9715740	Leaf	0.772
SRR9715741	Leaf	1.172
SRR9715739	Root	3.257
SRR9715742	Root	6.665
SRR9715743	Root	4.618

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.518
SRR8749028	MeJA induced 9h	7.180
SRR8749029	MeJA induced 9h	3.192
SRR8749030	Uninduced	0.817
SRR8749031	Uninduced	0.428
SRR8749032	Uninduced	0.444

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.521
SRR8400027	Control - Root	8.181