Gene detail

Gene detail information of Glyur001088s00027871.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17330.1	0	glutamate decarboxylase
NR	XP_003544967.1	0	PREDICTED: glutamate decarboxylase 1-like [Glycine max]
COG	YP_007243829.1	1.00E-158	glutamate decarboxylase [Thioflavicoccus mobilis 8321]
Swissprot	tr\|Q42521\|DCE1_ARATH	0	Glutamate decarboxylase 1
trEMBL	tr\|I1MBS2\|I1MBS2_SOYBN	0	Glutamate decarboxylase {ECO:0000256\|RuleBase:RU361171}

Sequence

Transcript Sequence

>Glyur001088s00027871.1
ATGGCTCTGTCGAATGCCTGCGGATCCCAAATGGACGTCTCTGTCCATTCAACCTTCGCATCTCGCTATGTCCGCACCTCCCTTCCCAGGATGGCGGAGACGTCGATCCCGAAGGAAGCGGCGTACCAGATCATAAACGACGAGCTGATGCTGGACGGAAACCCGAGGCTGAACCTGGCCTCCTTCGTCACCACGTGGATGGAGCCTGAATGTGACAAACTCATCATGGCTTCCATCAACAAAAACTACGTCGACATGGACGAGTACCCTGTCACCACCGAGCTCCAGGCAACTCATCTTTTCAATGCACCACTTGAAGAGTCAGAACCTGCAGTTGGTGTTGGCACTGTTGGCTCCTCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAGAGGAAGTGGCAGAACAAAAGGAAAAATGAAGGGAAGCCTATTGACAGCCCCAACATTGTCACTGGTGCTAATGTTCAGGTTTGTTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAACTGAAGGAGGTAAAGCTGCGTGATGGATACTATGTAATGGACCCTGAAAAGGCTGTGGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAGTTTGAAGATGTCAAACGCTTAAACGATCTCCTAGTGGAGAAAAATAATGAAACTGGATGGGACACACCAATTCATGTGGATGCAGCCAGTGGTGGATTCATTGCACCATTTCTTTATCCAGAGCTTGAGTGGGACTTCCGGTTACCACTTGTGAAGACCATCAATGTTAGTGGGCACAAATATGGTCTAGTCTATGCTGGAATTGGTTGGGTCATCTGGAGAAGCAAGGAAGACCTTCCTGAGGAACTCATCTTCCACATTAACTACCTCGGAGCTGATCAACCCACCTTCACTCTCAACTTCTCCAAAGGTAGTAAATGTGCATTTGACTCATACATGTTGAGAATATCCAAGTGGTCTAGCCAAGTTATTGCTCAGTACTACCAACTGATTCGTTTGGGTCATGAGGGATACAGAAATGTGATGGAGAACTGCAGAGACAACATGATGGTGCTTAAGGAGGGTCTTGAGAAAACAGGTCGGTTTGACATTGTATCCAAAGATGATGGTGTGCCATTAGTGGCCTTAACTCTGAAGGACCATGGCCATTATGATGAGTTCCAAATCTCTGACATGTTGAGGCGCTTTGGTTGGATAGTGCCAGCATACACAATGCCCCCAGATGCACAACACGTGACAGTGCTCCGTGTTGTGATCAGGGAAGACTTCTCACGTACCCTTGCGGAGCGTCTTGTCAATGACATCACCAAGGTTCTCCATGACCTCGATTTGCTTCCTGCAAAGGTGCTCAGTAACAACACCATAACGGTTAATGCGGAAGAAGATGGAAACAATGGGGGAGGCAATAAAGTGATGATTGCTAAGAAGAGTGATCTGGAGACCCAAAGGGAAATCACTTCGATTTGGAAGAAATTTGTGATGGAGAGGAAGAAGATGAACTGTGTTTGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01088	34103	38989	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01580	E4.1.1.15, gadB, gadA, GAD	EC:4.1.1.15	Butanoate metabolism	map00650
			Alanine, aspartate and glutamate metabolism	map00250
			beta-Alanine metabolism	map00410
			Taurine and hypotaurine metabolism	map00430
			Quorum sensing	map02024
			GABAergic synapse	map04727
			Type I diabetes mellitus	map04940

Gene Ontology

biological_process

GO:0006536 glutamate metabolic process

GO:0019752 carboxylic acid metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004351 glutamate decarboxylase activity

GO:0016831 carboxy-lyase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001088s00027871.1	PF00282.14	Pyridoxal_deC	38	389	7.50E-89

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.639
SRR1783600	control	0.726
SRR1783602	moderate drought stress	0.697
SRR1811619	moderate drought stress	0.627

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.319
DRR006520	Root Summer glycyrrhizin high producing strain	1.242
DRR006521	Root Winter glycyrrhizin high producing strain	0.215
DRR006522	Root Winter glycyrrhizin high producing strain	0.209
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.068
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.557
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.464

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.867
SRR2868004	Drought Stress (root)	1.457
SRR2967015	Control (root)	2.277

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.059
SRR9715740	Leaf	0.076
SRR9715741	Leaf	0.070
SRR9715739	Root	0.185
SRR9715742	Root	0.130
SRR9715743	Root	0.056

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.337
SRR8749028	MeJA induced 9h	0.180
SRR8749029	MeJA induced 9h	0.137
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.109
SRR8749032	Uninduced	0.069

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.155
SRR8400027	Control - Root	0.616