Gene detail

Gene detail information of Glyur001088s00027870

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G65950.1	6.00E-135	Protein kinase superfamily protein
NR	XP_004490789.1	0	PREDICTED: uncharacterized aarF domain-containing protein kinase 1-like isoform X1 [Cicer arietinum]
COG	YP_007272584.1	2.00E-47	2-polyprenylphenol 6-hydroxylase [Tepidanaerobacter acetatoxydans Re1]
Swissprot	tr\|O04212\|Y2090_ARATH	2.00E-61	Putative ABC1 protein At2g40090 (Precursor)
trEMBL	tr\|K7KAH0\|K7KAH0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G40830.2}

Sequence

Transcript Sequence

>Glyur001088s00027870.1
CGTTAATCGAAGCCCCCCCGAGAAGGTAGCCGAGCCTCTGCCTTAGACCTTCGTCGCTACCAGTAAAAGTGTAAAACCCATGCAGCGATAAACCCCTCCCACATGAAATGGCGCTAAAACTTTTCAACTTTCCCGCCAAACGCAGAACCCCACTTTTCCTTCTAACCGCAACTGCAACCGCCGCCGTCGCTGCCTTTAACTCCGACGAACTCTCCCCTCTCCCGGCATTCGACAGAATCGGAGCCGAAATCCACGGCCTCGTCCGCACCGCTCGCGCCGTCTCCACGGTTGCTTCCACTGTCGTCGACTACGAATTCTCTTTGCGCGGCCTTCAAAGGCACACCGATCAGTATCGGCAGGCGATTTCCCAGGTTCATCAACGCTCTGCGGAGAGGTTCCTCAAGTTATGCGAAGCCAACAAAGGGTTCTATGTTAAAGCTGGACAATTCGTCGCTGCGCAAAAAGTGCTTCCGAGAGAGTACTCATCAGCTTTGTCTGCGTTACAGGACCAGGTTGCTCCTCTTCCTTTTAAAGTTNTTGAGGAAGTGTTAAAGGATAATCTCGGACCTGATTTCCCTGATTTGTTTTTGTCCTTTGATGAACAACCTATAGCCGCTGCATCTATTGCTCAAGTTCACCATGCAGTGCTGAAAAATGGTCACGAAGTGGCAATCAAGGTGCAATATCCTTGGATAGAGCAGCAGATGCATTTTGATACAAGAACAATGTATTTCCTATCAAAAACTATCGCATGGTTATACCCTCAATACAGGCTTGAGTGGCTACCATTAGCGTTTGCCAAGTCTGTGTCTTCAGAAATTGATTTTGTTAAGGAGGCAAGGAATTCTGAGAGAGCAGCCAAAAATTTCAGAAACAACAAAGTGGTCAGGATCCCTCATGTATTCTGGGAGTTGACAACAAGGCAAGTCCTAACCATGCAGTTTTGTACGGGACACAGGATTGATGACTTGGACTTTCTGAATCAGATTGGGGTTGATCCAGAAAAGGTAGCAAAATCACTGATTGAGGTGTTTGCTGAAATGATATTTGTGCATGGTTACATACATGGTGATCCACATGCTGGTAATATATTAGTTTCTCCTGAAGTCTACAGGGAATTGGATGAAGAATTTAGGAAAGACTTTTGTCAGTTATGGGAAGCCTTGATTCTCAAGGACTCAAAGAGAACAATGTGGCTCGGTGAGCGATTTGGTGCTGGGAAGTATTCTCGATACTTACCTATCATTTTCACTGGAACAACTATTGAAAGCAAATATTCTTTTGGAATATCAATCGAGGAAAAAGAGACAATGAAACATGAATTGAAATCTCTGTTGTTTGAGGACTTATCTTCATTNCTGGAGTCTCTGCCCCCAGATTTTATTGCTATAATGCGTGTAGATGCACTGTTAAGGTCAATCATTAGAAAGATGGATGTCTCACGGCTCATCAGGTTGCTAACTTACACCAAATATGCGGTCTATGGTCGTCTTTGTCCAAAATTGGATAATGAATTGTGTAAAATGCCCACTACAAACGTTTATTATGCTGTGAAAGCTGTTTTTTTCAGTTTCATATCAACGTTAAAATATCTTCACATCCTAGTTAAGGTCCTTATCGGTGCCTTTGACGGTACCCCTTGGCGGCAGAAGGTGAAGAATGTACTGAATTACTTGTATAGCAAGATAAGTAGTGACTTCTGTGGCCTTCTGGTTCATTCCGTTTTTCTTCTTTTATGTACGCGTCCTAATGCATCGTTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01088	24798	31741	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001088s00027870.1	PF03109.11	ABC1	152	266	1.10E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.324
SRR1783600	control	1.362
SRR1783602	moderate drought stress	2.306
SRR1811619	moderate drought stress	2.317

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.782
DRR006520	Root Summer glycyrrhizin high producing strain	1.770
DRR006521	Root Winter glycyrrhizin high producing strain	1.491
DRR006522	Root Winter glycyrrhizin high producing strain	1.476
DRR006523	Root Summer glycyrrhizin low producing strain	1.015
DRR006524	Root Summer glycyrrhizin low producing strain	1.050
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.702
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.771

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.109
SRR2868004	Drought Stress (root)	2.510
SRR2967015	Control (root)	2.065

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.521
SRR9715740	Leaf	0.243
SRR9715741	Leaf	0.225
SRR9715739	Root	0.476
SRR9715742	Root	0.565
SRR9715743	Root	0.544

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.739
SRR8749028	MeJA induced 9h	1.054
SRR8749029	MeJA induced 9h	1.754
SRR8749030	Uninduced	0.995
SRR8749031	Uninduced	0.663
SRR8749032	Uninduced	0.102

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.415
SRR8400027	Control - Root	2.717