Gene detail information of Glyur001087s00023161 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23440.1 | 2.00E-25 | ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 |
| NR | XP_003524574.1 | 2.82E-50 | PREDICTED: ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Glycine max] |
| Swissprot | tr|P80680|FTRV_MAIZE | 9.00E-28 | Ferredoxin-thioredoxin reductase, variable chain |
| trEMBL | tr|I1K1Q3|I1K1Q3_SOYBN | 1.00E-50 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G09390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01087 | 68253 | 69754 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001087s00023161.1 | PF02941.10 | FeThRed_A | 84 | 158 | 2.10E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.303 |
| SRR1783600 | control | 42.427 |
| SRR1783602 | moderate drought stress | 35.866 |
| SRR1811619 | moderate drought stress | 35.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.475 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.703 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.589 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.150 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.926 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.399 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 563.583 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 569.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.560 |
| SRR2868004 | Drought Stress (root) | 41.930 |
| SRR2967015 | Control (root) | 32.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 294.343 |
| SRR9715740 | Leaf | 351.061 |
| SRR9715741 | Leaf | 224.498 |
| SRR9715739 | Root | 52.847 |
| SRR9715742 | Root | 36.218 |
| SRR9715743 | Root | 37.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.732 |
| SRR8749028 | MeJA induced 9h | 11.676 |
| SRR8749029 | MeJA induced 9h | 12.744 |
| SRR8749030 | Uninduced | 12.467 |
| SRR8749031 | Uninduced | 2.939 |
| SRR8749032 | Uninduced | 5.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 46.166 |
| SRR8400027 | Control - Root | 49.599 |