Gene detail

Gene detail information of Glyur001087s00023156

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08390.1	2.00E-23	Transducin/WD40 repeat-like superfamily protein
NR	KHN27492.1	6.16E-37	Katanin p80 WD40 repeat-containing subunit B1 like 1 [Glycine soja]
Swissprot	tr\|Q8H0T9\|KTNB1_ARATH	7.00E-25	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255\|HAMAP-Rule:MF_03022}
trEMBL	tr\|A0A022QAT8\|A0A022QAT8_ERYGU	4.00E-36	Uncharacterized protein {ECO:0000313\|EMBL:EYU24724.1}

Sequence

Transcript Sequence

>Glyur001087s00023156.1
TGTGTACTTTTTGTGTTTTGGTTTTCTGCTTCTTATTTGATATAAGTTTTCATCTGCCTTTATTAATTCATTTGTCTCCATTTGGAGCAAAAATGATGTNTTCCGTATTTTTTGGCTTCACTAATGTTCGATCATTTTTCTTACTAATTTGCAAGTAATCATTCACTCGCAATAATGGCAACATATCTTGGGTTTTCATGTTTGGATTTTCTATCAAAGCATTACTTAGACTCATTTGCCATATTTTTTCCAGTTACGGTGTTTTTAGTTCTATGTTGACAATTTTGACATCTATATATCTGTAGACATCTAGCAATATCGTTGGAAATGCTACTGAAGCTTGTCAGAATATTTGGTTCAGTAATCTATTCAACCCTATCAGCTAAACCCTCCGTTGGTGTTGATATCGAGGCAGAGAAAAGGCTAGAACGTTGCAACCTCTGCTTTATAGAGCTTGAAAAAGTCAAACGTTGTTTACCTTCTTTTACGAGAAGAGGAGGATCAATAGCAAAATCTGCACAAGAGTTGAATCTGGCTCTTCAGGATGTTTCGTGATTCTGACTGGATTAAATGTTTTTTGCTGCTCAAGTTTCGCCGGTGCTTTTAGGGGTTTTGTGCGTTTCGAAGATTAGAAACCTCTACACACCGAATAGTTTGATGCATTGTCTTTTGGCATCGAATGAAGCTCTGTCCTGTATGTACATTTATTGCTGTTAACATTTATGATCATTGATAAGTGGAGTCACTGATACTGCTAATTCTGCGACATATACACGACTGGAGCTGATGAGACATGTCGCCCTCTGCTGATGGTTGCACGGTTCTGTCTATAACCTATCGTCATCTGCTTAATGTGAAGATCTCACTCCGTTGGACAACTAACCTAATATGGCGCAAGATGCTACAACCCATCTAATCTTATTTGAAAATCTATGATTTCTGTTATGTTGCTTTTAGGAGCTGTTGTTATACATAGTGTGAGACAGTGAGCGGCCCGTTCATATTTNTCTTTGTTGCATATTCTTGTATGATTTTCTTTCAATGCTTTGGTGAACGATGACGATGGACTAGTGTCTTAATATAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01087	41551	42961	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001087s00023156.1	PF13925.1	Katanin_con80	1	72	8.50E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.917
SRR1783600	control	21.168
SRR1783602	moderate drought stress	18.274
SRR1811619	moderate drought stress	18.506

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.045
DRR006520	Root Summer glycyrrhizin high producing strain	14.298
DRR006521	Root Winter glycyrrhizin high producing strain	7.326
DRR006522	Root Winter glycyrrhizin high producing strain	7.665
DRR006523	Root Summer glycyrrhizin low producing strain	10.556
DRR006524	Root Summer glycyrrhizin low producing strain	9.813
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.217
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.927

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.996
SRR2868004	Drought Stress (root)	21.789
SRR2967015	Control (root)	23.282

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.417
SRR9715740	Leaf	7.638
SRR9715741	Leaf	8.002
SRR9715739	Root	2.081
SRR9715742	Root	7.437
SRR9715743	Root	7.995

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.822
SRR8749028	MeJA induced 9h	10.789
SRR8749029	MeJA induced 9h	12.369
SRR8749030	Uninduced	6.101
SRR8749031	Uninduced	3.682
SRR8749032	Uninduced	3.989

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.430
SRR8400027	Control - Root	27.361