Gene detail

Gene detail information of Glyur001087s00023152

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12110.1	0	actin-11
NR	XP_004489182.1	0	PREDICTED: actin-like [Cicer arietinum]
COG	YP_003266114.1	1.00E-90	actin/actin family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|O81221\|ACT_GOSHI	0	Actin
trEMBL	tr\|V7C0G7\|V7C0G7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22863.1}

Sequence

Transcript Sequence

>Glyur001087s00023152.1
GTATTGAGTGAAGCAGGTTGTTGTATTGCTTCTGAAATTAACCTTATCCATTATTTACTTCCATATTTTTCTCCAATTTTGTGTTTGANATTAGAAAATAGAAATAGAATTGGTGTGTAGAGAGAATGAATGGGTGATANTGATATAAGTATTGTACCTCCGTGAATTTCTCTCCCCCTCTCTCTCTGCAATTTTAAAATAGACAAAACGAAGGAGTGAGAATCCAATGGCTCCGATTCCGTGTGATGCTTGTTATATTCATTTGAATTAGCATTCTTCATTTCGTCTCTGACTCTGAGAATCTCTCTTCCTCTCTTCTCCTCATTCTGCATCCCTCAAGCAGAGTAGATATTAGAAGATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACGGGAATGGTTAAGGCAGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCTAGCATTGTGGGTCGTCCTCGCCACACCGGCGTGATGGTTGGCATGGGCCAAAAAGATGCATATGTTGGTGATGAGGCACAGTCTAAACGTGGTATCCTGACTCTCAAGTACCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTGGCCCCGGAAGAGCATCCTGTTCTATTAACGGAGGCTCCTCTTAACCCCAAGGCTAANCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTNAATGCCCCTGCTATGTATGTCGCCATTCAGGCTGTTCTTTCACTCTATGCCAGTGGTCGTACAACTGGTATTGTATTGGATTCTGGTGATGGTGTCAGTCACACTGTCCCTATCTATGAGGGTTATGCCCTNCCACATGCTATCCTCCGTCTCGATTTAGCCGGTCGTGACCTCACTGATTTCTTGATGAAAATTTTAACTGAACGTGGGTATTCTTTCACCACCTCAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTGGCTTACATTGCCCTTGACTATGAGCAAGAGCTAGAGACATCCAAGACCAGCTCTGCAGTGGAGAAGAGCTACGAGTTGCCTGATGGGCAGGTCATCACTATTGGTGCTGAACGTTTTAGGTGTCCAGAGGTCTTGTACCAACCATCCATGGTGGGAATGGAAGCTGTAGGAATTCATGAGACAACATACAACTCCATAATGAAATGTGATGTTGACATNAGGAAAGACCTATATGGTAACATTGTCCTTTCAGGAGGCACAACGATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATTTCTGCACTAGCCCCCAGCAGCATGAAGATCAAGGTGGTAGCTCCTCCTGAGAGAAAGTATAGTGTTTGGATTGGTGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAGATGTGGATTGCAAAGGCTGAGTATGACGAGTCTGGACCATCAATCGTGCATAGGAAATGCTTCTAAATTGTCTGAGCAATAGGGTTATTGAATTGGAGAAGATTGCTCTTTTATTCCTCAGGAAGAAGTGCGGCATGTAACTCTTTCATTCTAACTTTTGTTATCTGTCCATGTTATTCTCTAGTCTAGAGTGATGATTTGGAGGAGAGGAGTTTATTGTCAAAATGGTCCGCTTCTTCAGTATTATTATATATTTTGATAAGTTTTTACGACATTCATTATGCGTCTAAATTAGCCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01087	20550	23668	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001087s00023152.1	PF00022.14	Actin	5	377	4.20E-155
Glyur001087s00023152.2	PF00022.14	Actin	5	377	4.20E-155

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.026
SRR1783600	control	2.046
SRR1783602	moderate drought stress	0.971
SRR1811619	moderate drought stress	0.946

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.910
DRR006520	Root Summer glycyrrhizin high producing strain	4.913
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.546
DRR006524	Root Summer glycyrrhizin low producing strain	0.607
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.332
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.918

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.381
SRR2868004	Drought Stress (root)	4.583
SRR2967015	Control (root)	4.556

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.758
SRR9715740	Leaf	1.155
SRR9715741	Leaf	0.447
SRR9715739	Root	2.191
SRR9715742	Root	0.834
SRR9715743	Root	1.411

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.238
SRR8749028	MeJA induced 9h	0.865
SRR8749029	MeJA induced 9h	0.325
SRR8749030	Uninduced	0.560
SRR8749031	Uninduced	0.479
SRR8749032	Uninduced	0.805

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.845
SRR8400027	Control - Root	7.980