Gene detail information of Glyur001087s00023146 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17450.1 | 2.00E-55 | Heavy metal transport/detoxification superfamily protein |
| NR | KEH24715.1 | 3.03E-88 | heavy metal transport/detoxification superfamily protein [Medicago truncatula] |
| Swissprot | tr|Q9SZN7|HIP26_ARATH | 3.00E-41 | Heavy metal-associated isoprenylated plant protein 26 (Precursor) |
| trEMBL | tr|A0A072UG06|A0A072UG06_MEDTR | 1.00E-88 | Heavy metal transport/detoxification superfamily protein {ECO:0000313|EMBL:KEH24715.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01087 | 5693 | 6693 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001087s00023146.1 | PF00403.21 | HMA | 34 | 88 | 1.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.349 |
| SRR1783600 | control | 1.371 |
| SRR1783602 | moderate drought stress | 0.549 |
| SRR1811619 | moderate drought stress | 0.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.332 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.660 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.874 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.173 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.174 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.177 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.055 |
| SRR2868004 | Drought Stress (root) | 24.436 |
| SRR2967015 | Control (root) | 16.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.171 |
| SRR9715740 | Leaf | 0.135 |
| SRR9715741 | Leaf | 0.114 |
| SRR9715739 | Root | 0.329 |
| SRR9715742 | Root | 0.098 |
| SRR9715743 | Root | 0.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.800 |
| SRR8749028 | MeJA induced 9h | 0.449 |
| SRR8749029 | MeJA induced 9h | 2.593 |
| SRR8749030 | Uninduced | 2.037 |
| SRR8749031 | Uninduced | 0.896 |
| SRR8749032 | Uninduced | 1.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.560 |
| SRR8400027 | Control - Root | 5.560 |