Gene detail information of Glyur001087s00023145.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G66520.1 | 9.00E-127 | formyltransferase, putative |
| NR | KEH24713.1 | 0 | methionyl-tRNA formyltransferase [Medicago truncatula] |
| COG | YP_002940464.1 | 1.00E-44 | methionyl-tRNA formyltransferase [Kosmotoga olearia TBF 19.5.1] |
| Swissprot | tr|F4JP46|PURU2_ARATH | 1.00E-06 | Formyltetrahydrofolate deformylase 2, mitochondrial (Precursor) |
| trEMBL | tr|A0A072U6C9|A0A072U6C9_MEDTR | 0 | Methionyl-tRNA formyltransferase {ECO:0000313|EMBL:KEH24713.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01087 | 1040 | 5464 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00604 | MTFMT, fmt | EC:2.1.2.9 | One carbon pool by folate | map00670 |
| One carbon pool by folate | map00670 | |||
| Aminoacyl-tRNA biosynthesis | map00970 | |||
| Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001087s00023145.2 | PF00551.14 | Formyl_trans_N | 42 | 214 | 2.10E-31 |
| Glyur001087s00023145.2 | PF02911.13 | Formyl_trans_C | 268 | 307 | 1.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.207 |
| SRR1783600 | control | 5.214 |
| SRR1783602 | moderate drought stress | 8.704 |
| SRR1811619 | moderate drought stress | 8.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.702 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.148 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.848 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.331 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.015 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.096 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.390 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.510 |
| SRR2868004 | Drought Stress (root) | 9.519 |
| SRR2967015 | Control (root) | 10.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.689 |
| SRR9715740 | Leaf | 12.022 |
| SRR9715741 | Leaf | 7.313 |
| SRR9715739 | Root | 2.983 |
| SRR9715742 | Root | 4.331 |
| SRR9715743 | Root | 3.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.720 |
| SRR8749028 | MeJA induced 9h | 9.587 |
| SRR8749029 | MeJA induced 9h | 8.098 |
| SRR8749030 | Uninduced | 3.128 |
| SRR8749031 | Uninduced | 2.318 |
| SRR8749032 | Uninduced | 3.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.002 |
| SRR8400027 | Control - Root | 11.538 |