Gene detail

Gene detail information of Glyur001086s00029534.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79250.2	0	AGC kinase 1.7
NR	XP_003595879.1	0	Protein kinase [Medicago truncatula]
COG	YP_828765.1	1.00E-19	serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|Q1PFB9\|AGC17_ARATH	0	Serine/threonine-protein kinase AGC1-7 {ECO:0000305}
trEMBL	tr\|G7IT37\|G7IT37_MEDTR	0	AGC family Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AES66130.2}

Sequence

Transcript Sequence

>Glyur001086s00029534.1
ATGGTGATGAACCACAATATGTCATCAGGAGAATCTCATGAGACACATCATGATACTCATAGTTGTGCAAGTTCAGGAAACAATTCACCAACTCATCATCAACATCCCAAAATGGAGAATATTCAAGCAGAATCAAAAGATGCATATTGCACAACTGATCATGGAGCTGGACATGTGGAGCATGTTTCTAAAACTGATCATGCAAAGTTGGCAACCAAATCCAAACCCCAGAAACTAACCCCACAAAACAGAAACATTTATTCTGATTCCAACACTGCACACCAAAGTCCAAGNACAAAGAACATGCCTTCAAATTCTGATCATGCAGGGCTTCCAACAGGAATTGCAAAGGGATCTTCAGTGCCTAATAACCATTCTTCAAGGACCACAAATCAAGGACCAGGAAGTGGCACTAGCTCTCGTAGTGATAGTTTAGAGAGCACAAGTGCACCTTCCTTTAGGCCACACACTGGTGGTGATGTAAGGTGGGATGCAATTAACAACATGGTTTCTAAGTCTGGCCCTCTCAACGTTAGCCATTTCAGGCTCCTCAAGCGCATCGGTTATGGAGACATTGGGAGTGTGTACCTTGCTGAACTTAAAGGCACCAATGCACACTTTGCCATGAAGGTAATGGACAAGGCTGCTCTTATAAGCAGGAACAAGCTCCTGAGGGCACAGACAGAAAGGGAGATCCTTGGACTTCTTGATCACCCCTTCTTGCCTACCCTTTACTCTTACTTTGAAACTGACAAGTTTTACTGCCTGGTCATGGAGTTCTGTAGTGGGGGTGATCTTCATTCTCTTAGACAGAAGCAACCAAACCAGTGTTTCACTGAAGAAGCTGCAAGGTTTTATGCTTCAGAGGTTTTGTTAGCTCTTGAGTACCTGCACATGCTAGGCATTGTATACAGAGACTTNAAGCCAGAGAATCTCTTAGTGAGGGATGAAGGGCACATCATGCTCTCCGATTTCGACTTGTCCCTACGCTGCTCCGTGAGTCCTACACTAGTNAAGTCCTCATCAGCAAATAGTGGCGGCGGCGGCGATTCCAATGTTGTGTTAGGTGATGACCAAGTAGCACAAGCCAATGCTACTCAGCAATCATCAAGCTTCTTCCCTCGCATCTTGCCTTCAAAGAAGAACCGCAAGGCGAAATCAGACTTTGGCCTATTGGTCGGTGGGAACCGTCTCCCTGAGCTCATGGCTGAACCAACNAATGTGAAATCCATGTCATTTGTAGGGACACATGAGTACCTTGCACCTGAGATCATCAAAGGAGAGGGACATGGTAGTGCAGTGGATTGGTGGACTTTTGGGATATTCTTGTATGAGTTGTTACACGGGACAACACCTTTCAAAGGTTCAGGTTACAAGGCCACACTGTTCAATGTTGTTGGGCAGCCACTGAGGTTCCCAGATAGTCCTCAGGTGAGTTCTGTGGCAAAAGACCTTATNAAGGGGCTATTGGTGAAAGAGCCCCAGAAGAGGATTGCATATAAGAGAGGTGCTACTGAGATAAAGCAACACCCTTTCTTTGAAGGGGTGAATTGGGCTCTTGTTAGAAGTGCAATGCCACCACATATACCTGAAGCTATAGACTTTTCCAAGTATGCTAGCAAAGACAATTACATAGCAGCAACAGCAACAACAGGTGATAAGAANATGGCAGATATCGCTAATGATAAACAACACAACAACAGTACTACTACTACTACTACTGATTCTAATTACGTAGAGTTTGANTATTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01086	27349	31362	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001086s00029534.1	PF00069.20	Pkinase	181	331	2.40E-35
Glyur001086s00029534.1	PF00069.20	Pkinase	387	513	1.90E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.062
SRR1783600	control	0.077
SRR1783602	moderate drought stress	0.021
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.061
DRR006520	Root Summer glycyrrhizin high producing strain	0.061
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.106
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.106

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.025
SRR2868004	Drought Stress (root)	0.085
SRR2967015	Control (root)	0.101

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.227
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.027
SRR9715739	Root	0.023
SRR9715742	Root	0.035
SRR9715743	Root	0.096

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.081
SRR8749028	MeJA induced 9h	0.090
SRR8749029	MeJA induced 9h	0.035
SRR8749030	Uninduced	0.180
SRR8749031	Uninduced	0.131
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.041
SRR8400027	Control - Root	0.082