Gene detail information of Glyur001083s00026397 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79270.1 | 4.00E-110 | evolutionarily conserved C-terminal region 8 |
| NR | XP_003531473.1 | 0 | PREDICTED: YTH domain family protein 2 isoform X1 [Glycine max] |
| Swissprot | tr|A9LNK9|CPSF_ARATH | 5.00E-09 | 30-kDa cleavage and polyadenylation specificity factor 30 {ECO:0000303|PubMed:18479511} |
| trEMBL | tr|I1MJF8|I1MJF8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G41960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01083 | 46028 | 50741 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001083s00026397.1 | PF04146.10 | YTH | 382 | 524 | 6.70E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.195 |
| SRR1783600 | control | 43.297 |
| SRR1783602 | moderate drought stress | 46.403 |
| SRR1811619 | moderate drought stress | 46.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.003 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.182 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 73.952 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 71.955 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.427 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 36.380 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.812 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 71.678 |
| SRR2868004 | Drought Stress (root) | 93.823 |
| SRR2967015 | Control (root) | 72.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 63.585 |
| SRR9715740 | Leaf | 66.562 |
| SRR9715741 | Leaf | 74.414 |
| SRR9715739 | Root | 4.939 |
| SRR9715742 | Root | 38.102 |
| SRR9715743 | Root | 33.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.400 |
| SRR8749028 | MeJA induced 9h | 49.884 |
| SRR8749029 | MeJA induced 9h | 29.656 |
| SRR8749030 | Uninduced | 63.125 |
| SRR8749031 | Uninduced | 52.679 |
| SRR8749032 | Uninduced | 31.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 81.032 |
| SRR8400027 | Control - Root | 87.948 |