Gene detail information of Glyur001081s00024629 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12910.1 | 0 | serine carboxypeptidase-like 20 |
| NR | XP_004510209.1 | 0 | PREDICTED: serine carboxypeptidase-like 20-like [Cicer arietinum] |
| COG | YP_002430787.1 | 5.00E-22 | peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01] |
| Swissprot | tr|Q8L7B2|SCP20_ARATH | 0 | Serine carboxypeptidase-like 20 (Precursor) |
| trEMBL | tr|G7LEB3|G7LEB3_MEDTR | 0 | Carboxypeptidase {ECO:0000256|RuleBase:RU361156} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01081 | 73313 | 78896 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001081s00024629.1 | PF00450.17 | Peptidase_S10 | 35 | 492 | 1.10E-143 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.497 |
| SRR1783600 | control | 2.487 |
| SRR1783602 | moderate drought stress | 3.647 |
| SRR1811619 | moderate drought stress | 3.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.372 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.563 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.055 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.899 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.473 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.595 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.112 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.686 |
| SRR2868004 | Drought Stress (root) | 17.147 |
| SRR2967015 | Control (root) | 16.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.853 |
| SRR9715740 | Leaf | 18.409 |
| SRR9715741 | Leaf | 14.183 |
| SRR9715739 | Root | 1.871 |
| SRR9715742 | Root | 8.640 |
| SRR9715743 | Root | 8.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.208 |
| SRR8749028 | MeJA induced 9h | 2.590 |
| SRR8749029 | MeJA induced 9h | 2.082 |
| SRR8749030 | Uninduced | 1.750 |
| SRR8749031 | Uninduced | 0.772 |
| SRR8749032 | Uninduced | 1.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.659 |
| SRR8400027 | Control - Root | 13.567 |