Gene detail

Gene detail information of Glyur001081s00024628

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31700.1	8.00E-105	ribosomal protein S6
NR	NP_001242564.1	1.21E-173	uncharacterized protein LOC100801194 [Glycine max]
COG	YP_001737450.1	3.00E-20	30S ribosomal protein S6e [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|Q9M3V8\|RS6_ASPOF	2.00E-168	40S ribosomal protein S6
trEMBL	tr\|I1M223\|I1M223_SOYBN	9.00E-175	40S ribosomal protein S6 {ECO:0000256\|PIRNR:PIRNR002129}

Sequence

Transcript Sequence

>Glyur001081s00024628.1
TTAAAATTAAAATCGGTTTGGGCTTGTCAAGCCGATTTTCGGGGCCCAAAATCTCAGTGAAGAACCAGGGTAAAACCCTAGTTCATTTACGTGCGCACGTTCCTAGTTTTGAAGCTCTCAGAGAGGCAACGTTCGCTCGCTCGCTCGCAGGAAGAAGAGGTTACCAAAAATGAAGTTCAACATTGCAAATCCCACCACTGGCTGCCAGAAGAAGCTCGAGATCGATGATGATCAGAAGCTGCGAGCATTTTGGGACAAGAGAATCTCACAGGAGGTCAACGGAGATGCTCTGGGCGAGGAGTTCAAAGGCTATGTCTTCAAAATCACTGGTGGTTGTGACAAACAAGGGTTCCCAATGAAGCAGGGAGTGCTAACCCCTGGCCGTGTTCGTCTCTTGCTCCACAGAGGGACTCCTTGTTTCCGTGGGTACGGAAGACGTAATGGTGAGCGAAGGAGGAAGTCTGTTCGGGGGTGCATTGTCAGCCCAGATCTGTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTGAAAATGATTTACCAGGGCTGACTGATGTCGAGAAGCCAAGAATGAGAGGTCCAAAGAGAGCATCCAAAATTCGTAAGCTGTTCAACCTGTCTAAGGAAGATGATGTGAGGAAGTATGTCAACACATACCGTAGAACCTTCACAACAAAATCTGGGAAAAAGGTGAGCAAAGCTCCAAAGATTCAACGACTGGTCACTCCTTTGACACTGCAAAGAAAGAGGGCAAGAATTGCAGATAAGAAGAAGAGAATTGCCAAGGCAAAATCAGAGGCAGCCGAATATCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGGGAACGCCGCAGTGAGAGTTTGGCAAAGAGGAGATCCAAGATATCCAGTGTTTCTAAGCAAGCCGCCACTGCATAGGTTGGATGCTATGACAGATGAGNTTTAATCTTCATCCTAGTTTTGGTAGTGTCATTCCAGGATAGCTTCTTTATGCTAAACACTTAAGGTTGTGTTATTTAAACAGATTTGAGTTTATTCAACTACTTTCCAATTTTTATTCCTTGCAATCTGATTGAAGAATTTCACCTGCTTGAATTTTGGATCCAGTTGATATGTTTGTAACTTGTTGGTATTTGTGANCCTTGAATACATTTTTAGACTCCATTTTATCTGTGCCGCAATTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01081	67248	70665	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001081s00024628.1	PF01092.14	Ribosomal_S6e	1	128	6.10E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	65.155
SRR1783600	control	65.387
SRR1783602	moderate drought stress	75.367
SRR1811619	moderate drought stress	74.333

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	95.847
DRR006520	Root Summer glycyrrhizin high producing strain	94.440
DRR006521	Root Winter glycyrrhizin high producing strain	46.867
DRR006522	Root Winter glycyrrhizin high producing strain	45.628
DRR006523	Root Summer glycyrrhizin low producing strain	107.898
DRR006524	Root Summer glycyrrhizin low producing strain	107.205
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.801
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.604

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	191.730
SRR2868004	Drought Stress (root)	114.178
SRR2967015	Control (root)	109.644

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.692
SRR9715740	Leaf	55.358
SRR9715741	Leaf	56.032
SRR9715739	Root	13.768
SRR9715742	Root	53.577
SRR9715743	Root	47.925

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	258.412
SRR8749028	MeJA induced 9h	159.328
SRR8749029	MeJA induced 9h	205.389
SRR8749030	Uninduced	39.933
SRR8749031	Uninduced	29.259
SRR8749032	Uninduced	37.204

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	113.797
SRR8400027	Control - Root	98.704