Gene detail

Gene detail information of Glyur001081s00024625

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G17410.1	Spc97 / Spc98 family of spindle pole body (SBP) component
NR	XP_003548617.1	PREDICTED: gamma-tubulin complex component 2-like isoform X1 [Glycine max]
Swissprot	tr\|Q9C5H9\|GACP2_ARATH	Gamma-tubulin complex component 2
trEMBL	tr\|K7MFX3\|K7MFX3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G09341.1}

Sequence

Transcript Sequence

>Glyur001081s00024625.1
ACCGGAGGGAAGAAATAAACACAATAATAATAAGAGTAAGAATTAGGAAGCCCCTCAACTCAACCTTATTACTGATACTCCCGTGTTGTGTGCCAGCCAGCCAGCCATATCCATCCTGCTTGTCCCACTCTTCCTTTCCCGTTCCCATAATCGCAGGTGAGTTGGTGAGAAGAACAACAAGCTCTCCTTTCTCCTTTTATACGCTTCTTCACTTCCGATTCGCAAAGATCCTCGCCTCTCTTCACTCTTCCTTTTAACTAACTAACTAACTAACTAACTAATCTCCCTCTTTCTTCCTTCTCCTCTGCCGATCTGCTTCCGTTGCGCTCAGTCTGGACTCGATATGAACCAAACCGCCGTGAGCTTTGAAAAGCCAATAGGCTATTATGCTCCTGCAGTTCAAGAGCTTATTGTTATTGATGATGTGCTCTCGGCCATGGTCGGGATTGAAGGACGTTACATTTTAATCAAAACAGTTCGTGGAAAGAAGGATGATATTACTTTTGTGGTGGACCCATCCATGGATTTGGCACTACAGGAGTTGGCAAAACGGATATTCCCTCTCTCTAGGAGCTTTCTGTTGATCAACCATTTTGTGGAGTCAAGGTCTCAGTTCCAGAATGGCCTAGTTAATCATGCTTTTTCTGCTGCACTGAGGGCACTCCTTCTCGATTACCAGGCCATGGTGGCACAGCTCGAGCACCAATTTCGGCTTGGGAGACTTTCCCTTCAAGGGTTGTGGTTCTACTGTCAGCCCATGATGAGGTCAATGCAGGCATTGTCCACTGTCATACAGAAGGCTTCAGTCAACAATTTTTCTGGTTCTGCCGTTCTTAACTTACTGCAGAGCCAGGCAAAGGCTATGGCTGGAGATAATGCTGTTAGGTTGTTGCTGGAAAAAATGACACAATGTGCAAGCAGTGCTTACATGAGCATATTAGAAAGATGGGTCTATGAAGGAGTAATCGATGATCCTTATGGTGAATTTTTCATAGCAGAGGACAAATCTCTTCAAAAGGACAGTCTCACTCAAGATTATGATGCTAAGTACTGGCGACAACGTTACAGCCTCAAAGATGGAATTCCTAGTTTCCTTGCAAATATTGCGGGGACAATTTTGACCACAGGAAAATATCTAAATGTCATGAGAGAATGTGGACACAATGTTCAGGTCCCTCCATCAGAAAATTCGAAGCTAATGAGCTTTGGCTCAAATCATCATTACCTTGAATGCATTAAGGCTGCTTATAACTTTGCAAGTAGTGAACTCTTGAATCTCATTAAGGAAAAGTATGATCTAACAGGAAAGCTGCGGTCTATAAAACACTACCTTCTTCTTGATCAGGGTGATTTCTTAGTACATTTCATGGATATTGCTCGAGATGAGCTGGCCAAAAAGCCTGATGAAGTCTCAGTTGAGAAGCTGCAGTCTCTCCTAGACCTTGCTTTGCGTACTACAGCAGCTGCAGTAGATCCTTATCATGAAGGCTTGACCTGTATTGAAAGGTCATCTTTGCTTAAAAGGTTGGGCACATTCAATGATCTTGAAGTTAGCCAGAGAAATTCTGGTGACAATGATCTTCTGGAGGAGCCTGTGCACTGGCCACTGTCTATAGTGTTATCACGTAAAGCCCTTATAAAGTACCAGTTAATTTTTCGATTTCTTTTCCACTGTAAATATGTTGACCGTCAGCTGTGTGGAGCATGGCAAGTACATCAAGTTATTGAACCCAATTGGCATCTGATGTATAACAGACTTCAGTCAGCGAATAGCATAGATGAGGTTATACAACATCATGATTTTTTCCTTGATAAATGTTTGAGAGAGTGTTTACTTCTTTTACCTGAGCTGCTGAAGAAGGTGGAGAGGCTTAAATCTATGTGCCTACAATATGCAGCAGCAACTCAGTGGCTTATATCATCTTCTATCGTATTACGTAGTCCAGACGAACCTATGGATGATACAGTTGCAGCGAAACAACGGAAATCAGGTCAGGTCCTGAAGTCAACCACCAGAAATGTGGCAGTCACTGATTCTATTCTCAAATTTGAGAAGGAATTTAATACTGAGCTTCAGAGTCTTGGATCAATCTTGAGTAGTAGCTCACAGGCAGAGCCATATCTGGCCCATCTTGCACAATGGATTCTTGGTGTTAAACACGAACAGAATGGCTTGTGATGTGTTTTCAGTTTGGATTATCTGTGAGATGCTTAAGCAATTATGCATGTTACTGTAATTTTCGAGTACGGGTGTTTACATTCTGTTTACATTCTTTTTAAGGCTTGTGGTTACGTTTCTTTGTACCAATATTTGAGAATGTTTTGTTTTCTTATGTGTTTTCTATATGTTTTTGCCAAACTTTGTCCTGGCATTTCATGATTCAAACGTTGCTTTTCGTGAGTGATTAGTTCTTCCTGAACTATNCAAATGCCTATTGCACAAGATGAAAGAGCACCGAGCAAAGAGGCACATGTATCCTTNATGTGGATGGTTGAATGTAATAACCATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01081	43578	51945	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000226 microtubule cytoskeleton organization

cellular_component

GO:0000922 spindle pole

GO:0005815 microtubule organizing center

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001081s00024625.1	PF04130.8	Spc97_Spc98	27	459	4.00E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.654
SRR1783600	control	2.664
SRR1783602	moderate drought stress	2.314
SRR1811619	moderate drought stress	2.375

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.312
DRR006520	Root Summer glycyrrhizin high producing strain	4.215
DRR006521	Root Winter glycyrrhizin high producing strain	3.821
DRR006522	Root Winter glycyrrhizin high producing strain	3.694
DRR006523	Root Summer glycyrrhizin low producing strain	3.749
DRR006524	Root Summer glycyrrhizin low producing strain	3.707
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.343
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.342

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.123
SRR2868004	Drought Stress (root)	12.123
SRR2967015	Control (root)	11.379

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.245
SRR9715740	Leaf	11.088
SRR9715741	Leaf	13.434
SRR9715739	Root	2.599
SRR9715742	Root	5.462
SRR9715743	Root	5.518

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.501
SRR8749028	MeJA induced 9h	4.537
SRR8749029	MeJA induced 9h	3.912
SRR8749030	Uninduced	1.385
SRR8749031	Uninduced	0.553
SRR8749032	Uninduced	1.355

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.222
SRR8400027	Control - Root	13.700