Gene detail information of Glyur001081s00024624 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48460.1 | 0 | Actin binding Calponin homology (CH) domain-containing protein |
| NR | XP_004510210.1 | 0 | PREDICTED: fimbrin-like protein 2-like [Cicer arietinum] |
| Swissprot | tr|O50064|FIMB2_ARATH | 0 | Fimbrin-2 {ECO:0000305} |
| trEMBL | tr|G7LEC3|G7LEC3_MEDTR | 0 | Actin-binding calponin-like (CH) domain protein {ECO:0000313|EMBL:AET01347.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01081 | 37434 | 43054 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001081s00024624.1 | PF00307.26 | CH | 130 | 238 | 2.60E-13 |
| Glyur001081s00024624.1 | PF00307.26 | CH | 271 | 369 | 3.90E-19 |
| Glyur001081s00024624.1 | PF00307.26 | CH | 396 | 497 | 3.80E-20 |
| Glyur001081s00024624.1 | PF00307.26 | CH | 519 | 621 | 1.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.806 |
| SRR1783600 | control | 3.793 |
| SRR1783602 | moderate drought stress | 2.417 |
| SRR1811619 | moderate drought stress | 2.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.167 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.346 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.210 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.177 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.060 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.080 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.204 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.085 |
| SRR2868004 | Drought Stress (root) | 9.789 |
| SRR2967015 | Control (root) | 10.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.517 |
| SRR9715740 | Leaf | 0.580 |
| SRR9715741 | Leaf | 1.660 |
| SRR9715739 | Root | 0.188 |
| SRR9715742 | Root | 1.728 |
| SRR9715743 | Root | 1.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.391 |
| SRR8749028 | MeJA induced 9h | 6.148 |
| SRR8749029 | MeJA induced 9h | 3.251 |
| SRR8749030 | Uninduced | 0.223 |
| SRR8749031 | Uninduced | 0.263 |
| SRR8749032 | Uninduced | 0.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.437 |
| SRR8400027 | Control - Root | 14.121 |