Gene detail information of Glyur001081s00024622 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48500.1 | 2.00E-26 | |
| NR | XP_007134251.1 | 2.33E-79 | hypothetical protein PHAVU_010G031300g [Phaseolus vulgaris] |
| trEMBL | tr|V7ALX6|V7ALX6_PHAVU | 9.00E-80 | Uncharacterized protein {ECO:0000313|EMBL:ESW06245.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01081 | 28063 | 30238 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001081s00024622.1 | PF05627.6 | AvrRpt-cleavage | 9 | 34 | 8.70E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.101 |
| SRR1783600 | control | 18.870 |
| SRR1783602 | moderate drought stress | 14.928 |
| SRR1811619 | moderate drought stress | 14.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.693 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.018 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.248 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.241 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.167 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.367 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.969 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.091 |
| SRR2868004 | Drought Stress (root) | 24.711 |
| SRR2967015 | Control (root) | 23.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.618 |
| SRR9715740 | Leaf | 1.198 |
| SRR9715741 | Leaf | 1.830 |
| SRR9715739 | Root | 5.913 |
| SRR9715742 | Root | 12.219 |
| SRR9715743 | Root | 11.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.985 |
| SRR8749028 | MeJA induced 9h | 0.524 |
| SRR8749029 | MeJA induced 9h | 0.114 |
| SRR8749030 | Uninduced | 0.102 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.430 |
| SRR8400027 | Control - Root | 27.392 |