Gene detail

Gene detail information of Glyur001079s00032351

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16340.1	2.00E-114	AMP-dependent synthetase and ligase family protein
NR	XP_003544953.1	0	PREDICTED: probable acyl-activating enzyme 5, peroxisomal-like [Glycine max]
COG	YP_005031096.1	6.00E-100	putative AMP-binding enzyme [Azospirillum brasilense Sp245]
Swissprot	tr\|Q9FFE6\|AAE5_ARATH	3.00E-142	Probable acyl-activating enzyme 5, peroxisomal
trEMBL	tr\|I1MBP5\|I1MBP5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G38920.1}

Sequence

Transcript Sequence

>Glyur001079s00032351.1
ATGGCCCCCAACATCCCTGCCATGTACGAACTCCACTTCGCCGTACCCTTCGCCGGCGCCGTCCTCAACACCATCAACACACGCCTCGACGCCCGCACCATCTCCGTCATCCTCCGTCACGCCGAGTCCAAGCTCGTCTTCGTGGACTGCGCCTCACGCGATCTCATCCTCGAAGCCCTGTCACTATTCCCTTCACAACAACAAACAAAGTCAGCGCCCAATCCTCCAACCTCATCATCCACCGTTGGATTCACAGACACGTACGAGGGCTTAATAACGAAGGGTGATCCTGAGTTTAGGTGGGTCCAGCCAACAGCGAGAACGACGTCGTCTCCAAAAGGCGTTGTTCACTGCCACAGAGGAGCATTCATCGTAACCGTCGACTCGCTGATCGATTGGGCGGTTCCGAAGCAACCAACTTACCTGTGGACGCTCCCGATGTTCCACGCTAACGGGTGGAGCTTTCCGTGGGGGATCGCGGCCGTTGGTGGAACCAACATCTGCGTGCGCAAGTTCGACGCGGGAATCGTGTACGGCCTCATCAACCAACACGGCGTGACTCACATGTGTGGGGCCCCCGTTGTGCTCAACATGCTAACTAACTCCCCCGACAACAAACCACTCCAAAAGACCGTTCACATCCTCACCGCCGGGGCCACCGCCGCCGGCCGCCGTGCTTTTCCGTACGGAGTCGTTGGGATTCGCGGTGAGTCACGGCTATGGGCTTACAGAGACCGGCGCGTTGGTGGTTTCGTGCGCGTGGAAGAAGAAGTGGAACCGGCTACCAGCGACAGAGAGGGCGCGACTGAAGGCGCGACAAGGAGTGAGGACGATTGGTATGACGGAGATAGCGTGAAGCACGATGGCGTAACACTCGGAGAGGTAGTTATGAGAGGTGGGTGTCTTATGCTAGGGTACCTTAAGGACCCTGAGGGAACCGCGAATTGCTTCAAGAACGGGTGGTTCTACACAGGGGATGTTGGCGTGATGCATGAGGATGGGTATTTGGAGATAAAGGATAGATCGAAGGATGTGATTATCAGCGGCGGTGAGAATCTGAGCAGCGTGGAGGTGGAGTCGGTGCTTTATGGACACCCGGCGGTGAACGAGGCGGCGGTGGTGGCGAGACCGATGAGTTTTGGGGGGAGACGCCGTGTGCGTTCGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01079	88567	89818	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001079s00032351.1	PF00501.23	AMP-binding	1	219	5.60E-28
Glyur001079s00032351.1	PF00501.23	AMP-binding	281	348	2.40E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.009
SRR1783600	control	9.173
SRR1783602	moderate drought stress	17.353
SRR1811619	moderate drought stress	17.103

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.881
DRR006520	Root Summer glycyrrhizin high producing strain	19.326
DRR006521	Root Winter glycyrrhizin high producing strain	12.395
DRR006522	Root Winter glycyrrhizin high producing strain	13.472
DRR006523	Root Summer glycyrrhizin low producing strain	27.003
DRR006524	Root Summer glycyrrhizin low producing strain	27.984
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.933
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.080

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.814
SRR2868004	Drought Stress (root)	42.679
SRR2967015	Control (root)	46.544

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.104
SRR9715740	Leaf	41.697
SRR9715741	Leaf	54.205
SRR9715739	Root	39.315
SRR9715742	Root	41.850
SRR9715743	Root	40.897

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.417
SRR8749028	MeJA induced 9h	93.778
SRR8749029	MeJA induced 9h	100.234
SRR8749030	Uninduced	46.374
SRR8749031	Uninduced	82.700
SRR8749032	Uninduced	134.559

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.691
SRR8400027	Control - Root	8.476