Gene detail

Gene detail information of Glyur001079s00032348

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G16340.1	AMP-dependent synthetase and ligase family protein
NR	XP_004490748.1	PREDICTED: probable acyl-activating enzyme 6-like [Cicer arietinum]
COG	YP_421864.1	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Magnetospirillum magneticum AMB-1]
Swissprot	tr\|Q9FFE9\|AAE6_ARATH	Probable acyl-activating enzyme 6
trEMBL	tr\|G7K5Y7\|G7K5Y7_MEDTR	Long-chain acyl-CoA synthetase {ECO:0000313\|EMBL:AES99068.1}

Sequence

Transcript Sequence

>Glyur001079s00032348.1
ATGGACCGGCTAACCCGAAACCCTGCAAACTCAGCACCACTTACCCCACTCACGTTCCTTGACAGAGCAGCGATTGCGTACGGCGACTCCATTTCCATTGTNTACAACCGCACCTCTTTCACTTGGTCCCAAACCCACCGTCGATGCCTAAGGTTAGCTTCCTCACTCAACTCGCTCGGAATCGGAAGGGGTCACGTGGTTTCCGTGCTCTCTCCCAATACCCCTGCCATGTACGAGCTCCACTTCGCCGTACCCATGTCCGGCGCCACCCTCAACAACCTCAACTTCCGACTTGACCCACACACCCTCTCCCTGCTCCTCCGCCACAGCGAATCAAAGCTCCTCTTCGTCGACCCCCTCTTCCTTTCTCTCACCCTCAGAGCACTCTCACTATTCCCCGCANATACCCCGCGCCCGCATCTCGTCCTTATCAACGACGATGCAGTCGCGCAACACCAAAACACTCCCCCAAAACACATCCTTGACACCNACGAGGGCCTTATAACGAAAGGCGATCCGGGTTTCAAGTGGGTCAGACCCGAATCCGAGTGGGACCCAATAACACTTAACTACACCTCCGGAACGACGTCGTCTCCCAAGGGAGTCGTGCATTCCCACCGAGCAACCTTCNTCGTGGCCATGGACTCACTCATAGACTGGTCCGTACCAAAGCAGCCAGTCTACCTGTGGACCCTACCGATGTTCCACTCTAACGGGTGGAGCTTCCCGTGGGCGATCGCAGCCGTCGGGGGTACAAATATTTGCGCGCGTAGGGTTGACGCGCCGACGATCTACCGCCTGATCAAGTCACACGGAGTGACACACATGTGTGCCGCACCGGTGGTNCTCAACATGCTGTCGAGCTTCAACCGAATCGAACCGTTGAAAAACCCNGTCCACGTCCTCACCGGTGGGTCGCCGCCACCGGCCGTGGTTCTCTCACGCGCTGAGTCGCTGGGGTTCGTGGTGAGCCACGGNTACGGGATGACAGAGACGCTAGGGGTGATAGTGTCGTGCGTGTGGAAAAGTGAGTGGGACCGGTTTCCAGCGACGGAGAGGGCAAGGCTGAAGGCGAGACAGGGAGTGAGGAAGGTTGGTGTGACAGAGGTGGATGTGGTGGAAACAGAAACAGGAAGGAGCGTGAAGCGCGATGGGGTGANGGTTGGNGAGATCGTGGTGAGGGGAGCGTGCTTGATGCTGGGGTATTTAAAAGANGAGGAGGCCACGTGGCAGTGTATGAGAGGAGACGGTTGGTTTTACACNGGGGACGTTGGGGTGATACATGAGGATGGGTACTTGGAGATAAAGGATAGGTCGAAGGATGTGATAATAAGTGGTGGGGAGAACATGAGTAGTGTCGAGGTGGAGGCGGTGTTGTACACGCACCCGGCGGTTAAGGAGGCAGCGGTGGTGGCGAGGCCGGATGAGTTNTGGGGGGAGACNCCGTGTGCGTTCGTTAGCCTGAGGGAAGGGTTGAGTGGGGAGGAAAAGCCGACGGAGGCGGAGGTGGCGGAGTTCTGTAGGGAGAGGTTGCCGCACTTTATGGTGCCCAAGACGGTGGTGTTTAAGGAGGAGTTGCCTAAGACCTCCACGGGGAAGGTTCAGAAGCACGCGCTTAGAATGGATGCTCATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01079	70206	72632	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001079s00032348.1	PF00501.23	AMP-binding	22	445	2.60E-80
Glyur001079s00032348.1	PF13193.1	AMP-binding_C	454	533	2.80E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.850
SRR1783600	control	1.856
SRR1783602	moderate drought stress	1.392
SRR1811619	moderate drought stress	1.297

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.422
DRR006520	Root Summer glycyrrhizin high producing strain	14.146
DRR006521	Root Winter glycyrrhizin high producing strain	4.044
DRR006522	Root Winter glycyrrhizin high producing strain	4.005
DRR006523	Root Summer glycyrrhizin low producing strain	5.073
DRR006524	Root Summer glycyrrhizin low producing strain	5.419
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.689

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.538
SRR2868004	Drought Stress (root)	0.484
SRR2967015	Control (root)	0.585

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.355
SRR9715740	Leaf	3.592
SRR9715741	Leaf	1.903
SRR9715739	Root	0.713
SRR9715742	Root	2.467
SRR9715743	Root	1.251

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.372
SRR8749028	MeJA induced 9h	0.264
SRR8749029	MeJA induced 9h	0.317
SRR8749030	Uninduced	0.002
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.062
SRR8400027	Control - Root	0.416