Gene detail information of Glyur001079s00032344.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41880.1 | 1.00E-29 | DNA primases;DNA primases |
| NR | XP_004500398.1 | 3.37E-45 | PREDICTED: DNA primase small subunit-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|I1JJ44|I1JJ44_SOYBN | 1.00E-44 | DNA primase {ECO:0000256|RuleBase:RU003514} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01079 | 30020 | 33497 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K02684 | PRI1 | EC:2.7.7.- | Purine metabolism | map00230 |
| Pyrimidine metabolism | map00240 | |||
| DNA replication | map03030 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001079s00032344.1 | PF01896.14 | DNA_primase_S | 26 | 61 | 6.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.800 |
| SRR1783600 | control | 1.441 |
| SRR1783602 | moderate drought stress | 0.447 |
| SRR1811619 | moderate drought stress | 0.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.895 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.953 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.121 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.291 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.444 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.221 |
| SRR2868004 | Drought Stress (root) | 0.632 |
| SRR2967015 | Control (root) | 0.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.370 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.050 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.809 |
| SRR8749028 | MeJA induced 9h | 0.533 |
| SRR8749029 | MeJA induced 9h | 0.742 |
| SRR8749030 | Uninduced | 0.187 |
| SRR8749031 | Uninduced | 0.009 |
| SRR8749032 | Uninduced | 0.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.814 |
| SRR8400027 | Control - Root | 1.087 |