Gene detail

Gene detail information of Glyur001077s00026248.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02830.1	1.00E-36	zinc finger protein 1
NR	XP_007139732.1	5.24E-54	hypothetical protein PHAVU_008G054800g [Phaseolus vulgaris]
Swissprot	tr\|Q9SWF9\|ZFNL_PEA	6.00E-50	Zinc finger CCCH domain-containing protein ZFN-like
trEMBL	tr\|K7LFY7\|K7LFY7_SOYBN	2.00E-56	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G38650.5}

Sequence

Transcript Sequence

>Glyur001077s00026248.1
GAGGGCGAGGAGTAGAGAGAGGGAGAGAGAGATGAGGTTCGTGTGACGAGAAATGAAGTGAACGTGTGTTGTGGGAAACGCGGGTGAAGAAAAGCGAAAACAGCATTAGTAACAGTAATAGAATACTACATGTCTGGCGGTGTGGTGTGGTGTGGTGTGGTTGGTTGGTTTTTTATTCCATTGTTCTCATTTGCGGAGTGGAGAACAGTACAACGCCATTTGTTACTCTCTTTCCACACACACACACACACTGACACAACACACTCTCTCGCTGTCTTTTATTATTTATCTTTTTAAATAAATAATAATTATTTAATACTATTCAATTATTATTATTGTTGTCGTCGTTGTTGTGAGGTTGATCTCGGGGAGTCACAAACACAGACACAGACACAGACACAGCTTGTGTTGTGAGTTAGTTGTGAGTGTGTGTTAGAGTGACAGCGCGGTGACGATATGCTTGTATGGAATTCGATGCCGCAATTCCCATGTCTCGAGACTCCCTCCCTCAAGATGCANTGTGGCAAATGAACTTGAGGTCAAGTGAAACAATGGAATCAGGACCATATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCACGGATGAAAGGCGAGTTCCCAGAAAGGATAGGGCAGCCAGAATGTCAGGCATGTACTTGTTTCTCAATGAGTGCATAAGTACTATCTTAAAACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAAAGACAAGGCTGGGATTGCCGGAAGAGTTGCCTTGAATATTTTAGGCTATCCACTTCGCCCAAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAATAATATGGTGCTTTCAATGCGGGGTTCTCCTGTTTATCCTACCGTTCATTCTCCAACTACACCAGGTCAGCAGTCATATGCAGCAGGAATTACAAATTGGTCTAGTTCATCCTATATTCCTAGTCCACGCTGGCAAGGCCCTTCAAGTTATGCACCCTTAATTCTACCTCAGGGAATGGTTTCGGTGCCNGGGTGGAGTGCATACAATGGACAAATGGGATCGGACAGTCCACAACAAACAATGGGAAATGATCAAACTTATGGAACTTCTCGTCAAGGTGAACAGGAAAATGCAGGATCCCAAGGGGCATATTCTCAATTCCGTTCTGGCTCTGTTCCTGTAGGATTCTATGCTTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTTCACCATCCACGTGAGAGGATGATTCCCGCCCCTGACTGTGTTTTGAGTCCCATTGGCCTTCCTTTACGTCCTGGAGAACCTCTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAACATATCTCCATCATCATCATCTGATGCCCCTGGACGGCGTCTGTTGGGATCTTCATCAGGAACCGCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGTCGGGGTCAGCAAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATGACATTGATGATGAGGGATAATGTTGTCTCTTAGAAATGGGTCATCTGCTTCTTACAATTTTTTTCTCAGGGGAGAAAGGGTAATCTGTAAATTGATTTCCCCATCGCTGGAGATGTACAGAGGACAGACCACAGAGATCATGTTAANCTGATTCTGTCAGCCTGCTATTGAATGCAGTTGAAAAATTCAGTTCTTCTGGATTTCATGCTGCTACATTGTATAAATTTCACAAATGTTTGTCACATTGGTCAAAATCCAATGTGAACATTTCTTCAGTCCTTATGCCAGTCTATCTATTTAAAGTTTTCATAATGTAAAAAATATCTTTATCGAAATCTATAATGATTAATGTTTGGCTGCAGTGTGAATCTTTATTTGGTGCATGTTTGAAATTCATTAAAGCCTTTTCTTAAAACAGAGTGGGTTTATGCTGTATACTGTGCTTGTATAGAAATCTTTTTCAACGGCAAGCCAGCAGTAGGATCAATATCCTTTTATTTTGTATATTTGTGTGCATTCTTATCACAATTTAGCAGCTATCCAAGGTAGTCTTGATTATTATATGTAATGTATGTATATTTTCTTCAAGTAAAAATAAAGGCTACTACTGTTGTAGAACTTTATCTGTAATTCTACTTTCCCATGTTGTTTTGTAGTGATTGACTATCCTGGATAGAGTTCATTTTGCAGAAGTTGAAGGGCAAAGAGTCTGAACTGTGAATTTTGGTGGCAGCAAAAGCACTTGTTAATTATATGCTGTTTTGCAGATATTAAGCCTCAATGCAAATATGACTTTTGTTCTTGAAGGATTCAGGAATTACATGCTCCAAAAAAAGGTTGTAGGCGGTCTTTTCTGGCTTGGAGTTTGATTAACAGTTCACATGCAACTAAATCAAAGTCAGGGATTTAAATCCATTCTGGAGGCTTTATAAGAAGCAGCATTTCTGTGGCTGGAAGATACATGTGTAATGTGTTTGATATGTAAATCTAGAAGTGTTATCTATAAACTTATGCCAGAATATATCAATAAAATACAAAAGGATGGATAAGCACTAAATAGATGCTGCATATTGACAATATAAAGCAAGGGATAAGCAAATATGATAGGCTATTTTCTGTTCATGGGCATTTATTTCAGTGGTTGTCAATGTCTGCTCTGCATTGCGGCTTCACACGTAACTCTCCTTAGACCGTTGTGCTTTTGCCTCTAATTTAGAACATGCTCGGATATTTAATTTAAAGCTGCTNATGGGCTAAGGAATATCTGTTAATCTTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01077	72200	81034	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001077s00026248.1	PF00642.19	zf-CCCH	39	65	5.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.507
SRR1783600	control	30.606
SRR1783602	moderate drought stress	49.109
SRR1811619	moderate drought stress	49.025

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.519
DRR006520	Root Summer glycyrrhizin high producing strain	45.050
DRR006521	Root Winter glycyrrhizin high producing strain	25.137
DRR006522	Root Winter glycyrrhizin high producing strain	24.392
DRR006523	Root Summer glycyrrhizin low producing strain	81.400
DRR006524	Root Summer glycyrrhizin low producing strain	80.852
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.410
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.428

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.738
SRR2868004	Drought Stress (root)	41.302
SRR2967015	Control (root)	37.268

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.146
SRR9715740	Leaf	39.685
SRR9715741	Leaf	36.656
SRR9715739	Root	39.894
SRR9715742	Root	39.264
SRR9715743	Root	39.062

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.748
SRR8749028	MeJA induced 9h	33.823
SRR8749029	MeJA induced 9h	27.985
SRR8749030	Uninduced	23.193
SRR8749031	Uninduced	12.733
SRR8749032	Uninduced	20.219

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.931
SRR8400027	Control - Root	37.181