Gene detail information of Glyur001077s00026244 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16490.1 | 4.00E-28 | ROP-interactive CRIB motif-containing protein 4 |
| NR | XP_003624160.1 | 8.94E-85 | hypothetical protein MTR_7g079870 [Medicago truncatula] |
| Swissprot | tr|Q9FFD5|RIC4_ARATH | 6.00E-36 | CRIB domain-containing protein RIC4 |
| trEMBL | tr|Q2HW10|Q2HW10_MEDTR | 3.00E-85 | Wiscott-Aldrich syndrome, C-terminal {ECO:0000313|EMBL:ABD28373.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01077 | 55673 | 57089 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001077s00026244.1 | PF00786.23 | PBD | 112 | 130 | 3.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.061 |
| SRR1783600 | control | 2.032 |
| SRR1783602 | moderate drought stress | 2.887 |
| SRR1811619 | moderate drought stress | 2.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.081 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.984 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.310 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.301 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.616 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.298 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.368 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.487 |
| SRR2868004 | Drought Stress (root) | 10.118 |
| SRR2967015 | Control (root) | 5.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.676 |
| SRR9715740 | Leaf | 2.303 |
| SRR9715741 | Leaf | 0.467 |
| SRR9715739 | Root | 1.070 |
| SRR9715742 | Root | 3.109 |
| SRR9715743 | Root | 2.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.082 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.778 |
| SRR8400027 | Control - Root | 4.491 |