Gene detail information of Glyur001077s00026243 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12800.1 | 1.00E-53 | photosystem I subunit l |
| NR | NP_001236868.1 | 3.70E-91 | uncharacterized protein LOC100527240 [Glycine max] |
| Swissprot | tr|Q41385|PSAL_SPIOL | 2.00E-73 | Photosystem I reaction center subunit XI, chloroplastic (Precursor) |
| trEMBL | tr|C6T3Q7|C6T3Q7_SOYBN | 1.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G38610.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01077 | 53168 | 55078 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001077s00026243.1 | PF02605.10 | PsaL | 55 | 108 | 7.40E-20 |
| Glyur001077s00026243.1 | PF02605.10 | PsaL | 125 | 173 | 2.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.082 |
| SRR1811619 | moderate drought stress | 0.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.656 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.681 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.281 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.274 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.119 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.180 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2600.972 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2586.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.930 |
| SRR2868004 | Drought Stress (root) | 25.872 |
| SRR2967015 | Control (root) | 5.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1636.683 |
| SRR9715740 | Leaf | 1670.621 |
| SRR9715741 | Leaf | 1388.554 |
| SRR9715739 | Root | 0.350 |
| SRR9715742 | Root | 2.883 |
| SRR9715743 | Root | 2.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.165 |
| SRR8749028 | MeJA induced 9h | 1.992 |
| SRR8749029 | MeJA induced 9h | 1.045 |
| SRR8749030 | Uninduced | 1.739 |
| SRR8749031 | Uninduced | 4.786 |
| SRR8749032 | Uninduced | 4.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.604 |
| SRR8400027 | Control - Root | 7.416 |