Gene detail

Gene detail information of Glyur001077s00026240

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02800.1	3.00E-77	Tyrosine phosphatase family protein
NR	XP_007139727.1	2.94E-125	hypothetical protein PHAVU_008G054300g [Phaseolus vulgaris]
COG	YP_006719044.1	1.00E-10	protein tyrosine/serine phosphatase [Geobacter metallireducens GS-15]
Swissprot	tr\|Q9ZVN4\|Y1500_ARATH	1.00E-70	Probable tyrosine-protein phosphatase At1g05000
trEMBL	tr\|V7B5J4\|V7B5J4_PHAVU	1.00E-125	Uncharacterized protein {ECO:0000313\|EMBL:ESW11721.1}

Sequence

Transcript Sequence

>Glyur001077s00026240.1
GGCGCCGTATCGCTCACATTCCTAATCCTATTCGGATTCAAATATAATATTCAATATTCATAGCCTCCTTTAAGAAGAAGTGGGGAATTGGAGGAAGAAGCAGAATCTCAATAGAACTCTTGAGATTCTGAGTCTAAAGTCCTCGCGCTATATAAACATTCATTTCGATTCAATTTCGCACCTCGAATTCGAGAGAGAGAGAAAAAAGAGAGAGAGAGAGATTCGAAAGTTGAGTTTGAATGGGGGTGATAGTGGAGGTTGAAAACGAAGACGAAAACGACGCCGTTCTGGTCCCTCCGCCCAACTTCTCCATGGTGGAGGACTCCATTTACCGTTCCAGCTTCCCTCACCCCTCCAATTTCCCCTTCCTCCAAACCTTAAACCTTCGTTCCATCATATACCTGTGTCCTGAGCCCTATCCACAGGAGAATTTGGAGTTCCTCCGGTNACATAATATTCGGCTCTTTCAATTTGGAATTGAGGGGAAGTCGGAAGTTTCCTTACCTGATCTCAAGGATTCCATCATGGAGGCTGTGAGAGTTTTAATTGATGTGAGAAATCACCCAGTTCTGATCCATTGCAAAAGGGGAAAGCATAGAACCGGTTGCCTTGTTGGTTGCCTCAGAAAGTTGCAGAATTGGTGTCTGTCTTCTGTGTTTGAGGAGTACCAGCGATTTGCTGGTATAAAATCCAGGACAACGGATTTAACATTCATAGAAACATTTGACATCTTAACCCTTAGACAGTGCCTCTACAGCATCATCTACCAGTACCAAGGATATGGTTCAAGGAAGCGTCGTTTGCTGTATAAAGATGAGAATGAGACTTTACAGAAGCCCCGGTTGANATCATTTTAACTGCACCCCGGGATTTAACTCCTTTTTCTTTTATTAATTTCATTTGGTAGGATTCATTCATACTTCAAAGTAGTTGCTTAGAATCATTGATCGTTCGTTATATCCTTAGGATTTTCAAAGATCTTTAGAGTGCTGCCAAAATTATGCACATATTGGTTTTTTTTTTATCTCCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01077	44469	46476	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016311 dephosphorylation

molecular_function

GO:0004725 protein tyrosine phosphatase activity

GO:0016791 phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001077s00026240.1	PF03162.8	Y_phosphatase2	17	164	3.20E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.049
SRR1783600	control	3.056
SRR1783602	moderate drought stress	4.074
SRR1811619	moderate drought stress	4.231

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.562
DRR006520	Root Summer glycyrrhizin high producing strain	5.289
DRR006521	Root Winter glycyrrhizin high producing strain	30.239
DRR006522	Root Winter glycyrrhizin high producing strain	28.476
DRR006523	Root Summer glycyrrhizin low producing strain	34.892
DRR006524	Root Summer glycyrrhizin low producing strain	34.522
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.475
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.706

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.090
SRR2868004	Drought Stress (root)	38.933
SRR2967015	Control (root)	23.102

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.280
SRR9715740	Leaf	9.916
SRR9715741	Leaf	29.310
SRR9715739	Root	5.313
SRR9715742	Root	7.646
SRR9715743	Root	8.188

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	86.804
SRR8749028	MeJA induced 9h	272.569
SRR8749029	MeJA induced 9h	325.051
SRR8749030	Uninduced	246.626
SRR8749031	Uninduced	812.076
SRR8749032	Uninduced	554.965

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.075
SRR8400027	Control - Root	19.367