Gene detail

Gene detail information of Glyur001075s00028486.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19490.1	7.00E-51	Histone superfamily protein
NR	XP_003518474.1	1.20E-141	PREDICTED: dr1-associated corepressor-like [Glycine max]
Swissprot	tr\|Q9ZVL3\|NFYC3_ARATH	3.00E-11	Nuclear transcription factor Y subunit C-3
trEMBL	tr\|K7KB58\|K7KB58_SOYBN	4.00E-142	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G44500.2}

Sequence

Transcript Sequence

>Glyur001075s00028486.1
CACTTTGCTTCTTCGTCTTCTTCAACGTTTGGCCCTCGTTCTTCGTTCTTCTTGTTTCCTTTCCCTTAATAAAGCGGGGTGGGGTTTGGGCTGAGCTTCTTCTTCAACCGTATTCCACCCACTCTTTACAACATGAGGAAGAAACTAGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATTATGCAAGCTGATGAGGATGTAGGGAAGATTGCAATGGCTGTGCCTCTTCTAGTTTCTAAAGCACTAGAGCTATTTCTGCAAGATTTGTGTGATCGAACATATGAGATAACACTTAGGAGGGGAGCAAAGACGATGAATTCTTTTCATTTAAAACAGTGTGTACAGACTTTTAATGTCTTTGACTTTCTGAAAGATATTGTGAGCAAGGTTCCTGATTTAGGTGGTTCTGTCGCAACTGGCGATGATCAAACTGTCACTAAGAGAAGGAAAGTCGCTGAAGATGGTGATAATGACAACGACGAGGAGACTAAGAGAAATAAAATGCCAGAGCCTGGACATACTAGTGGAAGAGGAAAGGGTAGGGGCAGAGGTAGGGGCCGTGGCCGTGGAAGTAGAACAATAGATCAAGAGACAACTTCACATATCAAGTTTGAAGACGATGCTGATGNGTTGAAGCAAAACGACAAGCACTCTCAAAGCAATGAAAGCCCGGAACATGTGCTGGAATCCGAGGAAGATAAGCAGGATTGTCCAGTTAGCAAACCTGCTGAAGTGGCCATTCGGAATTTTGACTTAAATATGAACCCAGATGAGAACATGGATTCGTCATCCACATCAACAATTCCTGTCCCAGCTGGTTCATCTGGAAAATCAATGTCAGAGGAGAAGCACGAGGAATACCCCGGATGGTTCTTGTCTGACGTGGAAAAAATGAGTATTGATCCCATGCAACTGGCCAACTTAGATAGAAGAATTGATGAAGATGTGGAGGATTATGATGAAGTCTAGAAACTTGCTTTGGTTTAACTTTGACTTCTCATAAAGGTCAGTTGTTAGAAAGTTCTGATTNAGAATTAGAATATAGATTTTTTTAGGAGTAGACTTTACAAGAGTAGTGTTAGACAGATCCTTAGTGGTTAATTTGGAGGATTAGGAGGCATTGAATACTCTCCTTACTAATACTACTACCTTAGTTTAGAGGCTCAAAGTGGAATCATTGTTCTATTTAGAAATAGCTAATGGTGTTGTAGTTTTAGTATTCTAATCTTATGTAATGTAGGCATTGCCTATGGTAGGCACTGCATTCAGATTTTAGGTGTATGTATGTGCAGAAACTCACTCCTCCTAGACTCCTACAACTTAAAATCTTTGGGATGCCTGCCTCCCTTAGGCAATGCCTTTACAAGTATTTTCTTTATGATTTTGTTTTCCCATTAATCACAGTTAGCTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01075	44467	47830	+

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YC
EAR motif-containing Proteins	NF-YC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function

GO:0043565 sequence-specific DNA binding

GO:0046982 protein heterodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001075s00028486.1	PF00808.18	CBFD_NFYB_HMF	8	71	3.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.133
SRR1783600	control	2.432
SRR1783602	moderate drought stress	3.107
SRR1811619	moderate drought stress	2.741

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.730
DRR006520	Root Summer glycyrrhizin high producing strain	13.526
DRR006521	Root Winter glycyrrhizin high producing strain	6.522
DRR006522	Root Winter glycyrrhizin high producing strain	7.402
DRR006523	Root Summer glycyrrhizin low producing strain	4.110
DRR006524	Root Summer glycyrrhizin low producing strain	4.044
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.870
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.518

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.239
SRR2868004	Drought Stress (root)	4.304
SRR2967015	Control (root)	5.054

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.312
SRR9715740	Leaf	52.461
SRR9715741	Leaf	52.761
SRR9715739	Root	19.759
SRR9715742	Root	22.328
SRR9715743	Root	22.901

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.930
SRR8749028	MeJA induced 9h	11.318
SRR8749029	MeJA induced 9h	29.220
SRR8749030	Uninduced	16.567
SRR8749031	Uninduced	42.872
SRR8749032	Uninduced	46.087

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.069
SRR8400027	Control - Root	24.411