Gene detail

Gene detail information of Glyur001075s00028480

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12110.1	4.00E-69	Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
NR	XP_007146187.1	5.32E-130	hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
Swissprot	tr\|Q84WM9\|EF1B1_ARATH	7.00E-106	Elongation factor 1-beta 1
trEMBL	tr\|V7BNN2\|V7BNN2_PHAVU	2.00E-130	Uncharacterized protein {ECO:0000313\|EMBL:ESW18181.1}

Sequence

Transcript Sequence

>Glyur001075s00028480.1
TCAAAACCAGGCGAGAGACTCTCACATCGTCTAAGTTGAGAGGTGGCGACTCATTAGGGTTTGTGATAGTGCAGGGTGATATAAATACCAATTATTGAACATCGAGCAACTCCCTCGAGTCTCGACACTTTACACACTACACTTTCCTCTGCACTCTTCACTACCACTCGTCAAAACACACAAATGGCCNTTACCTTTTCAGATCTACACACAGAAGGGGGCCTCAAATCCCTCGATCAATTCCTCTCTGGGAAGACTTACATCTCCGGGGATCAATTGACAAAGGATGATATCAAAGTGTATGCAGCTGTTCTAGAAAAGCCAGGAGACTCTTTTCCCAGTGCTGCCAAGTGGTACGATGTTGTCTCTTCACATCTTGCTGCAAGTTTCCCTGGGAACGCGCAAGGGGTAAGATTCAGTGCCAAAGCTGCTTCAGCAGCTGAAGCTACACCTGCCAAAGGGGATGCTCCTGCGGCAGATGATGATGATGATCTCGATCTCTTTGGCGATGAAACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCCGCCAAGAAGAAAGAAAGTGGCAAGTCTTCTGTTCTGCTCGACGTCAAGCCTTGGGACGACGAGACAGACATGAAGAAGCTGGAAGAGGCCGTTCGTAGCATCGAGATGCCTGGTCTATTCTGGGGAGCATCCAAACTGGTTCCAGTGGGATATGGGATCAAGAAGCTGCAGATCATGTTGACTATTGTTGATGACCTTGTATCTGTGGACTCCCTCATTGAGGAACGCCTGACAGTTGAGCCATGCAATGAGTACATCCAAAGCTGTGACATTGTTGCATTCAACAAAATTTAAGGTTTCTTCTTCTTGTTCTTAGTTTGGCCATTTTCAAGAGGCTGATCAGTTTGTTATTTGCTGATACCAACCCCCCCAAAAAAAAATTCAGGTCCCTTTAAGTTTTCATGTTTGGTCTGTTTCAATGGTGGTTTTGTTACAAGAATTGTATGTGAAGCAACAGAGATATAGATATGTTATTCTTGTAAAACACCTTGCACTTTTTTGTGGGACATCAGTGAACGAATATGCTTCTATTTAATTTTTGAAAAGTTTCACTAGACCCCTCTAACTTCATTGAATCTATCTGTAGTAATAACGTAGCATAAGGTCAATTTGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01075	18407	22266	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006414 translational elongation

cellular_component
GO:0005853 eukaryotic translation elongation factor 1 complex

molecular_function
GO:0003746 translation elongation factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001075s00028480.1	PF00736.14	EF1_GNE	135	224	1.90E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	531.075
SRR1783600	control	532.515
SRR1783602	moderate drought stress	663.040
SRR1811619	moderate drought stress	661.844

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	734.634
DRR006520	Root Summer glycyrrhizin high producing strain	728.697
DRR006521	Root Winter glycyrrhizin high producing strain	626.215
DRR006522	Root Winter glycyrrhizin high producing strain	608.339
DRR006523	Root Summer glycyrrhizin low producing strain	401.609
DRR006524	Root Summer glycyrrhizin low producing strain	401.557
DRR006525	Leaf Summer glycyrrhizin high producing strain	87.350
DRR006526	Leaf Summer glycyrrhizin high producing strain	86.151

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	448.858
SRR2868004	Drought Stress (root)	307.017
SRR2967015	Control (root)	378.423

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	161.294
SRR9715740	Leaf	160.762
SRR9715741	Leaf	143.208
SRR9715739	Root	917.434
SRR9715742	Root	605.057
SRR9715743	Root	669.625

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	678.755
SRR8749028	MeJA induced 9h	225.049
SRR8749029	MeJA induced 9h	468.163
SRR8749030	Uninduced	55.674
SRR8749031	Uninduced	64.863
SRR8749032	Uninduced	182.696

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	390.339
SRR8400027	Control - Root	370.458