Gene detail information of Glyur001074s00039525 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19290.1 | 4.00E-113 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004488328.1 | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LN69|PPR50_ARATH | 3.00E-135 | Putative pentatricopeptide repeat-containing protein At1g19290 |
| trEMBL | tr|G7IIX7|G7IIX7_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:AES65841.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01074 | 75685 | 77307 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001074s00039525.1 | PF01535.15 | PPR | 176 | 200 | 0.04 |
| Glyur001074s00039525.1 | PF12854.2 | PPR_1 | 241 | 271 | 4.10E-07 |
| Glyur001074s00039525.1 | PF13041.1 | PPR_2 | 277 | 326 | 9.70E-16 |
| Glyur001074s00039525.1 | PF12854.2 | PPR_1 | 348 | 376 | 4.90E-08 |
| Glyur001074s00039525.1 | PF12854.2 | PPR_1 | 381 | 409 | 1.00E-06 |
| Glyur001074s00039525.1 | PF13041.1 | PPR_2 | 422 | 465 | 2.10E-14 |
| Glyur001074s00039525.1 | PF13041.1 | PPR_2 | 489 | 537 | 3.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.653 |
| SRR1783600 | control | 2.951 |
| SRR1783602 | moderate drought stress | 4.690 |
| SRR1811619 | moderate drought stress | 4.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.644 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.251 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.602 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.399 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.560 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.326 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.416 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.953 |
| SRR2868004 | Drought Stress (root) | 7.167 |
| SRR2967015 | Control (root) | 6.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.049 |
| SRR9715740 | Leaf | 3.101 |
| SRR9715741 | Leaf | 4.158 |
| SRR9715739 | Root | 2.709 |
| SRR9715742 | Root | 9.637 |
| SRR9715743 | Root | 8.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.481 |
| SRR8749028 | MeJA induced 9h | 1.772 |
| SRR8749029 | MeJA induced 9h | 0.931 |
| SRR8749030 | Uninduced | 0.928 |
| SRR8749031 | Uninduced | 1.032 |
| SRR8749032 | Uninduced | 0.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.994 |
| SRR8400027 | Control - Root | 8.805 |