Gene detail

Gene detail information of Glyur001074s00039524

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19290.1	3.00E-93	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_006588075.1	0	PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290-like [Glycine max]
Swissprot	tr\|Q9LN69\|PPR50_ARATH	6.00E-108	Putative pentatricopeptide repeat-containing protein At1g19290
trEMBL	tr\|I1L263\|I1L263_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G11690.1}

Sequence

Transcript Sequence

>Glyur001074s00039524.1
ATGAAAGAACTTGGATGCTCACCGGATGAACTAACATATAGGACTTTGAGTGATGGATATTGTAAAATTNGCAATGTTGGTGAAGCTTTTAGAATTAAAGATGTGATGGAAAGACAAGCGATTTCTCCTTCCATTGAAATGTACAATTCCCTTATTAANGGACTTTTTAAGTCTAGGAAGTCGAACGATGTCACTAATCTCCTTGTCGAGATGCAAACAAGAGGATTATCACCAAACGTTGTTACCTATGGAACCCTTGTTACTGGCTGGTGCAATGAAGAGAAACTGGACAAAACTTGTAATTTATATTTTGAGATGATTGAAAGAGGGCTCACTTCCAATTCGGTGGTCTGTAGCAAAATTGTTAGCAGCCTTTATAAGGATGATAGAATCAATGAGGCAACTGTGATCCTAGACAAGATGGTGGATTTTGATCTTCTTACCATTCATAAAGGCTCCGATGAGTTTATAAAAAATGATGCAAGTCTAGAAGCTCAGAAAATTGCCGATTCTCTTGATAAAAGTGTTATATGTAATTCTCTCCCCANTAATATTGTGTACAACATAGCTATAGCTGGACTTTGCAAGTCTGGGAANGTTGATGAAGCAAGAAGTGTTCTGTCAGTTTTGATGTCTAAAGGTTTTCTTCCAGATAATTTCACATATTGTACATTAATTCATGCCTGTTCAGCTGNTGGCAATGTGGANGATGCTTTCAACTTAAGGAATGAGATGCTGGAGAGAGGTCTTATTCCAAATATTACTACATACAATGCATTAATTAATGGTTTGTGCAAATTAGGAAATATGGATCGAGCACAGAGACTTTTCCATAAACTTCATCAAAAGGGTTTGGTTCCTAATGTTGTCACCTATAATATACTAATAAGTGGTTATTGTAGAATTGGCGATCTTGATAAAGCCTCTAAACTGAGAGAGAAGATGNTAGAAGAAGNGATTTCTACANGTACTCCGGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01074	74678	75658	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001074s00039524.1	PF12854.2	PPR_1	5	37	1.00E-07
Glyur001074s00039524.1	PF13041.1	PPR_2	46	92	6.60E-12
Glyur001074s00039524.1	PF13041.1	PPR_2	185	230	4.90E-11
Glyur001074s00039524.1	PF13041.1	PPR_2	252	301	1.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.175
SRR1783600	control	1.695
SRR1783602	moderate drought stress	2.798
SRR1811619	moderate drought stress	2.727

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.044
DRR006520	Root Summer glycyrrhizin high producing strain	3.164
DRR006521	Root Winter glycyrrhizin high producing strain	2.068
DRR006522	Root Winter glycyrrhizin high producing strain	1.776
DRR006523	Root Summer glycyrrhizin low producing strain	3.733
DRR006524	Root Summer glycyrrhizin low producing strain	3.841
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.683
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.830

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.886
SRR2868004	Drought Stress (root)	12.693
SRR2967015	Control (root)	7.461

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.421
SRR9715740	Leaf	4.750
SRR9715741	Leaf	6.024
SRR9715739	Root	2.521
SRR9715742	Root	10.543
SRR9715743	Root	11.420

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.738
SRR8749028	MeJA induced 9h	3.633
SRR8749029	MeJA induced 9h	1.588
SRR8749030	Uninduced	2.299
SRR8749031	Uninduced	4.021
SRR8749032	Uninduced	1.189

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.740
SRR8400027	Control - Root	9.030