Gene detail information of Glyur001073s00034680 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77180.3 | 6.00E-34 | chromatin protein family |
| NR | XP_003594547.1 | 3.13E-43 | SNW domain-containing protein [Medicago truncatula] |
| Swissprot | tr|O80653|SKIP_ARATH | 1.00E-38 | SNW/SKI-interacting protein |
| trEMBL | tr|G7IKW7|G7IKW7_MEDTR | 1.00E-43 | GAMYB-binding protein {ECO:0000313|EMBL:AES64798.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01073 | 78419 | 78928 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001073s00034680.1 | PF02731.10 | SKIP_SNW | 4 | 118 | 3.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.473 |
| SRR1783600 | control | 0.117 |
| SRR1783602 | moderate drought stress | 0.148 |
| SRR1811619 | moderate drought stress | 0.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.870 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.854 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.693 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.700 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.475 |
| SRR2868004 | Drought Stress (root) | 5.708 |
| SRR2967015 | Control (root) | 6.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.065 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.541 |
| SRR9715743 | Root | 0.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.720 |
| SRR8749028 | MeJA induced 9h | 25.472 |
| SRR8749029 | MeJA induced 9h | 30.139 |
| SRR8749030 | Uninduced | 31.350 |
| SRR8749031 | Uninduced | 31.515 |
| SRR8749032 | Uninduced | 29.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.622 |
| SRR8400027 | Control - Root | 0.583 |