Gene detail information of Glyur001072s00031301 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01340.1 | 8.00E-151 | Mitochondrial substrate carrier family protein |
| NR | XP_003519192.1 | 0 | PREDICTED: mitochondrial succinate-fumarate transporter 1 isoform X1 [Glycine max] |
| Swissprot | tr|Q9M038|SFC1_ARATH | 0 | Mitochondrial succinate-fumarate transporter 1 |
| trEMBL | tr|V7ACZ7|V7ACZ7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03402.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01072 | 18601 | 27570 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001072s00031301.1 | PF00153.22 | Mito_carr | 107 | 195 | 1.20E-18 |
| Glyur001072s00031301.1 | PF00153.22 | Mito_carr | 202 | 296 | 2.00E-20 |
| Glyur001072s00031301.1 | PF00153.22 | Mito_carr | 304 | 395 | 1.50E-25 |
| Glyur001072s00031301.2 | PF00153.22 | Mito_carr | 97 | 185 | 1.20E-18 |
| Glyur001072s00031301.2 | PF00153.22 | Mito_carr | 192 | 286 | 1.90E-20 |
| Glyur001072s00031301.2 | PF00153.22 | Mito_carr | 294 | 385 | 1.40E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.414 |
| SRR1783600 | control | 7.496 |
| SRR1783602 | moderate drought stress | 11.027 |
| SRR1811619 | moderate drought stress | 10.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.168 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.262 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.779 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.438 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.331 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.199 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.340 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.724 |
| SRR2868004 | Drought Stress (root) | 16.380 |
| SRR2967015 | Control (root) | 19.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.702 |
| SRR9715740 | Leaf | 10.708 |
| SRR9715741 | Leaf | 10.433 |
| SRR9715739 | Root | 21.215 |
| SRR9715742 | Root | 15.069 |
| SRR9715743 | Root | 13.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.536 |
| SRR8749028 | MeJA induced 9h | 28.975 |
| SRR8749029 | MeJA induced 9h | 28.294 |
| SRR8749030 | Uninduced | 46.656 |
| SRR8749031 | Uninduced | 40.145 |
| SRR8749032 | Uninduced | 40.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.472 |
| SRR8400027 | Control - Root | 18.578 |